miRBase entry: ath-MIR162a

Stem-loop ath-MIR162a


Accession
MI0000194
Description
Arabidopsis thaliana ath-MIR162a precursor miRNA
Gene family
MIPF0000127; MIR162_1

Literature search
17 open access papers mention ath-MIR162a
(49 sentences)

Sequence

uaguuggaagaagagugagagucgcUGGAGGCAGCGGUUCAUCGAUCucuuccugugaacacauuaaaaauguaaaagcaugaauagaUCGAUAAACCUCUGCAUCCAGcguuugccucuuguaucuuucuuauugacuu
.(((((((((((((.((((((.(((((((.((((.((((.((((((((.(((.(((....(((((...)))))....))).))).)))))))).)))).)))).))))))).....))))))..)).))))).)))))).

Structure
u      -     -  -g      ----u       G    C    C        c   c   gaac     a 
 aguugg aagaa ga  ugagag     cgcUGGA GCAG GGUU AUCGAUCu uuc ugu    acauu  
 |||||| ||||| ||  ||||||     ||||||| |||| |||| |||||||| ||| |||    ||||| a
 ucaguu uucuu cu  guucuc     gcGACCU CGUC CCAA UAGCUaga aag acg    uguaa  
u      a     u  au      cguuu       A    U    A        u   u   aaaa     a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr5: 2634905-2635044 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR162a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ath-miR162a-3p

Accession MIMAT0000182
Description Arabidopsis thaliana ath-miR162a-3p mature miRNA
Sequence 89 - UCGAUAAACCUCUGCAUCCAG - 109
Evidence experimental
cloned [1,3], Northern [1], 3'RACE [3], 5'RACE [3], 454 [4-5], MPSS [4]

Mature ath-miR162a-5p

Accession MIMAT0031876
Description Arabidopsis thaliana ath-miR162a-5p mature miRNA
Sequence 26 - UGGAGGCAGCGGUUCAUCGAUC - 47
Evidence not_experimental

References

  1. PubMed ID: 12101121
    MicroRNAs in plants
    "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
    "Genes Dev (2002) 16:1616-1626

  2. PubMed ID: 12202040
    Prediction of plant microRNA targets
    "Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP"
    "Cell (2002) 110:513-520

  3. PubMed ID: 16040653
    Expression of Arabidopsis MIRNA genes
    "Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC"
    "Plant Physiol (2005) 138:2145-2154

  4. PubMed ID: 16954541
    MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
    "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
    "Genome Res (2006) 16:1276-1288

  5. PubMed ID: 17182867
    A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
    "Genes Dev (2006) 20:3407-3425