miRBase entry: ath-MIR163

Stem-loop ath-MIR163


Accession
MI0000196
Description
Arabidopsis thaliana ath-MIR163 precursor miRNA
Gene family
MIPF0001116; MIR163

Literature search
11 open access papers mention ath-MIR163
(144 sentences)

Sequence

acccgguggauaaaaucgaguuccaaccucuucaacgacaacgauuucaacacucucuuccaggaacaacuuccuccaggcagaugauacuaaagugcuggaguucccgguuccugagagugaguccauaucaaaaugcgcauucguuaucacuugguugaacccauuuggggauuuaaauuuggaggugaaauggaacgcguaauugaugacuccuacguggaaccucuucuuaggaagagcacggucgaagaaguaacugcgcagugcuuaaaucguagaugcuaaagucgUUGAAGAGGACUUGGAACUUCGAUauuaucccccgugu
((.(((.((((((.(((((((((((((((((((((((((............((((((....((((((......((((((.((..(.......)..))))))))......))))))))))))(((((...(((((..(((((.((((((.((((((..((((((((.....))).)))))......))))))))))))..))))).))))))))))...((((....((((((....))))))))))........((((.(((((..((......))))))).))))...)))))))))))))..))))))).))))).)))))).))).))

Structure
  c   u      a     -       --             aacgauuucaacacucucuuccaggaacaacuuccuccaggcagaugauacuaaagugcuggaguucccgguuccugagagu     cau     aa     -a      a      ----gg     -   a 
ac cgg ggauaa aucga guuccaa  ccucuucaacgac                                                                                  gaguc   aucaa  ugcgc  uucguu ucacuu      uugaa ccc u
|| ||| |||||| ||||| |||||||  |||||||||||||                                                                                  |||||   |||||  |||||  |||||| ||||||      ||||| ||| u
ug gcc ccuauu UAGCU CAAGGUU  GGAGAAGUUgcug                                                                                  cucag   uaguu  augcg  agguaa agugga      aauuu ggg u
  u   c      a     U       CA             --------aaaucguagaugcuaaauucgugacgcgucaaugaagaagcuggcacgagaaggauucuucuccaaggugcauc     ---     -a     ca      -      gguuua     a   g 


Annotation confidence Not enough data
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Genome context
chr1: 24884066-24884396 [+]

Database links

Mature ath-miR163

Accession MIMAT0000184
Description Arabidopsis thaliana ath-miR163 mature miRNA
Sequence 294 - UUGAAGAGGACUUGGAACUUCGAU - 317
Evidence experimental
cloned [1-2], Northern [1], 5'RACE [2], 454 [3-4], MPSS [3], Illumina [5]

References

  1. PubMed ID: 12101121
    MicroRNAs in plants
    "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
    "Genes Dev (2002) 16:1616-1626

  2. PubMed ID: 16040653
    Expression of Arabidopsis MIRNA genes
    "Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC"
    "Plant Physiol (2005) 138:2145-2154

  3. PubMed ID: 16954541
    MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
    "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
    "Genome Res (2006) 16:1276-1288

  4. PubMed ID: 17182867
    A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
    "Genes Dev (2006) 20:3407-3425

  5. PubMed ID: 19815687
    Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
    "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
    "J Exp Bot (2010) 61:165-177