Accession
MI0000210
Description
Arabidopsis thaliana
ath-MIR168a precursor miRNA
Gene family
MIPF0000081;
MIR168
Literature search
29 open access papers mention ath-MIR168a
(85 sentences)
(85 sentences)
Sequence
caccaucgggcucggauUCGCUUGGUGCAGGUCGGGAAccaauucggcugacacagccucgugacuuuuaaaccuuuauugguuugugagcagggauuggauCCCGCCUUGCAUCAACUGAAUcggauccucgaggug
((((.(((((.((.((((((.((((((((((.(((((.((((((((((((...)))))...((.(((.((((((......)))))).))))).))))))).))))).)))))))))).)))))).)).)).)))))))
((((.(((((.((.((((((.((((((((((.(((((.((((((((((((...)))))...((.(((.((((((......)))))).))))).))))))).))))).)))))))))).)))))).)).)).)))))))
Structure
a - c g C U A ggcugacacagccucg a u uu
cacc ucg gg uc gauUCG UUGGUGCAGG CGGGA ccaauuc ug cuu uaaacc u
|||| ||| || || |||||| |||||||||| ||||| ||||||| || ||| ||||||
gugg agc cc ag cUAAGU AACUACGUUC GCCCu gguuagg ac gag guuugg a
- u u g C C a ---------------g - u uu
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
MIR168a thought to target mRNAs coding for Argonaute (AGO1), which is required for axillary shoot meristem formation and leaf development in Arabidopsis. It has been suggested that AGO1 may also influence miRNA accumulation in plants and that miR168 may act as a negative-feedback mechanism for controlling expression of the AGO1 gene [2].
Genome context
chr4: 10578635-10578772 [+]
Database links
Mature ath-miR168a-5p
| Accession | MIMAT0000198 |
| Description | Arabidopsis thaliana ath-miR168a-5p mature miRNA |
| Sequence | 18 - UCGCUUGGUGCAGGUCGGGAA - 38 |
| Evidence |
experimental
cloned [1,3], Northern [1], 454 [4-5], MPSS [4], Illumina [6] |
Mature ath-miR168a-3p
| Accession | MIMAT0031884 |
| Description | Arabidopsis thaliana ath-miR168a-3p mature miRNA |
| Sequence | 103 - CCCGCCUUGCAUCAACUGAAU - 123 |
| Evidence | not_experimental |
References
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