Accession
MI0000213
Description
Arabidopsis thaliana
ath-MIR170 precursor miRNA
Gene family
MIPF0000030;
MIR171_1
Literature search
11 open access papers mention ath-MIR170
(23 sentences)
(23 sentences)
Sequence
cgagagagucccucugaUAUUGGCCUGGUUCACUCAGAuucucuuuuacuaacucaucUGAUUGAGCCGUGUCAAUAUCucaguccucucucg
((((((((...((..(((((((((.(((((((.((((((................)))))).))))))).)))))))))..))..))))))))
((((((((...((..(((((((((.(((((((.((((((................)))))).))))))).)))))))))..))..))))))))
Structure
ucc cu C C ucucuuu
cgagagag cu gaUAUUGGC UGGUUCA UCAGAu u
|||||||| || ||||||||| ||||||| ||||||
gcucucuc ga CUAUAACUG GCCGAGU AGUcua a
-cu cu U U cucaauc
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
MIR170 is thought to target mRNAs coding for GRAS domain or SCARECROW-like proteins, a family of transcription factors whose members have been implicated in radial patterning in roots, signaling by the phytohormone gibberellin, and light signaling [2].
Genome context
chr5: 26411580-26411672 [-]
Database links
Mature ath-miR170-3p
| Accession | MIMAT0000201 |
| Description | Arabidopsis thaliana ath-miR170-3p mature miRNA |
| Sequence | 59 - UGAUUGAGCCGUGUCAAUAUC - 79 |
| Evidence |
experimental
cloned [1,3], Northern [1], 5'RACE [3], 454 [4-5], MPSS [4] |
Mature ath-miR170-5p
| Accession | MIMAT0031887 |
| Description | Arabidopsis thaliana ath-miR170-5p mature miRNA |
| Sequence | 18 - UAUUGGCCUGGUUCACUCAGA - 38 |
| Evidence | not_experimental |
References
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