Accession
MI0000218
Description
Arabidopsis thaliana
ath-MIR159b precursor miRNA
Gene family
MIPF0000010;
MIR159
Literature search
50 open access papers mention ath-MIR159b
(460 sentences)
(460 sentences)
Sequence
ggaaGAGCUCCUUGAAGUUCAAUGGaggguuuagcagggugaaguaaagcugcuaagcuauggaucccauaagccuuaucaaauucaauauaauugaugauaagguuuuuuuuauggaugccauaucucaggagcuuucacuuaccccuuuaauggcuucacucuucUUUGGAUUGAAGGGAGCUCUUcaucucuc
.((((((((((((..(((((((.(((((((..(((((((..((((((((((.((.((.(((((...(((((((((((((((...(((((...)))))))))))))).....))))))...))))).)).)).)))))).))))..))))......)))..))))))).)))))))..)))))))))))).......
.((((((((((((..(((((((.(((((((..(((((((..((((((((((.((.((.(((((...(((((((((((((((...(((((...)))))))))))))).....))))))...))))).)).)).)))))).))))..))))......)))..))))))).)))))))..)))))))))))).......
Structure
------g GA U uu ------ ug - g a c auc ----- aau a
gaaGAGCUCCUU AGUUCAA GGagggu agc aggg aagu aaagcu cu ag uaugg ccauaa gccuuauca ucaau
|||||||||||| ||||||| ||||||| ||| |||| |||| |||||| || || ||||| |||||| ||||||||| ||||| u
cUUCUCGAGGGA UUAGGUU cuucuca ucg uccc uuca uuucga ga uc auacc gguauu uggaauagu aguua
cucucua AG U cu guaauu ca c g c u gua uuuuu --- a
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
Reference [1] described the discovery of MIR159b, but referred to the sequence by the internal identifier MIR40b. This sequence is not related to C. elegans miR-40. MIR159b is found on chromosome 1 in Arabidopsis thaliana [2] and is thought to target mRNAs coding for MYB proteins which are known to bind to the promoter of the floral meristem identity gene LEAFY [3].
Genome context
chr1: 6220646-6220841 [+]
Database links
Mature ath-miR159b-3p
| Accession | MIMAT0000207 |
| Description | Arabidopsis thaliana ath-miR159b-3p mature miRNA |
| Sequence | 168 - UUUGGAUUGAAGGGAGCUCUU - 188 |
| Evidence |
experimental
cloned [1-2,4], 5'RACE [4], 454 [5-6], MPSS [5], Illumina [7] |
Mature ath-miR159b-5p
| Accession | MIMAT0031889 |
| Description | Arabidopsis thaliana ath-miR159b-5p mature miRNA |
| Sequence | 5 - GAGCUCCUUGAAGUUCAAUGG - 25 |
| Evidence | not_experimental |
References
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