Stem-loop sequence mmu-mir-190a

Accession

MI0000232 (change log)

Previous IDs

mmu-mir-190

Symbol

MGI:Mir190a

Description

Mus musculus miR-190 stem-loop

Gene family

MIPF0000076; mir-190

Literature search

19 open access papers mention mmu-mir-190a
(58 sentences)

Stem-loop

       - ug               ua     uuau 
5' cugu g  auauguuugauauau  gguug    u
   |||| |  |||||||||||||||  |||||     
3' gaca c  uauacgaacuauaua  ucaac    u
       u cu               --     cuaa 

Deep sequencing

18445 reads, 57.7 reads per million, 78 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr9: 67236660-67236726 [-]
• Overlapping transcripts:

  sense

  ENSMUST00000102424 ; Mir190-201; exon 1

  ENSMUST00000040025 ; Tln2-202; intron 53

  ENSMUST00000039662 ; Tln2-201; intron 53

Database links

• EntrezGene:Mirn190
• MGI:Mir190a
• RNAcentral:URS0000759F9E_10090
• miRBase Tracker:MI0000232

Mature sequence mmu-miR-190a-5p

• Accession: MIMAT0000220
• Previous IDs: mmu-miR-190;mmu-miR-190-5p
• Sequence: 6 - ugauauguuugauauauuaggu - 27
• Deep sequencing: 18266 reads, 77 experiments
• Evidence: experimental; cloned [1-2], Illumina [4]
• Database links:
  • RNAcentral:URS0000520927_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-190a-5p
  • miRDB:mmu-miR-190a-5p
  • microrna.org:mmu-miR-190a-5p

Mature sequence mmu-miR-190a-3p

• Accession: MIMAT0016998
• Previous IDs: mmu-miR-190*;mmu-miR-190-3p
• Sequence: 42 - acuauauaucaagcauauuccu - 63
• Deep sequencing: 179 reads, 35 experiments
• Evidence: experimental; 454 [3], Illumina [4]
• Database links:
  • RNAcentral:URS000037E4E1_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-190a-3p
  • miRDB:mmu-miR-190a-3p

References

1. PMID:12554859 "New microRNAs from mouse and human" Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T RNA. 9:175-179(2003).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20668074 "Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68" Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H J Virol. 84:10266-10275(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).