Stem-loop mmu-mir-202

Accession

MI0000245

Symbol

MGI: Mir202

Description

Mus musculus mmu-mir-202 precursor miRNA mir-202

Gene
family

RF00705; mir-202

Literature search

19 open access papers mention mmu-mir-202
(76 sentences)

Sequence

175684 reads, 753 reads per million, 44 experiments

guuccuuuUUCCUAUGCAUAUACUUCUUUguggaucuggucuaaAGAGGUAUAGCGCAUGGGAAGAuggagc
(((((.(((((((((((.((((((((((..(((((...)))))))))))))))..))))))))))).)))))

Structure

     u           -A          Ug     c 
guucc uuUUCCUAUGC  UAUACUUCUU  uggau  
||||| |||||||||||  ||||||||||  ||||| u
cgagg AGAAGGGUACG  AUAUGGAGAa  aucug  
     u           CG          --     g 

Annotation confidence Medium

Genome context

chr7: 139957689-139957760 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mmu-mir-202

Mature mmu-miR-202-5p

• Accession: MIMAT0004546
• Description: Mus musculus mmu-miR-202-5p mature miRNA
• Sequence: 9 - UUCCUAUGCAUAUACUUCUUU - 29
• Evidence: experimental ; cloned [3], Illumina [4-5]

Mature mmu-miR-202-3p

• Accession: MIMAT0000235
• Description: Mus musculus mmu-miR-202-3p mature miRNA
• Sequence: 45 - AGAGGUAUAGCGCAUGGGAAGA - 66
• Evidence: experimental ; cloned [1-3], Illumina [4-5]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 12554859
   New microRNAs from mouse and human
   "Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T"
   "RNA (2003) 9:175-179


3. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


4. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


5. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009