Stem-loop sequence mmu-mir-203

Accession

MI0000246 (change log)

Symbol

MGI:Mir203

Description

Mus musculus miR-203 stem-loop

Gene family

MIPF0000108; mir-203

Literature search

103 open access papers mention mmu-mir-203
(754 sentences)

Stem-loop

      u    c         u    g    a     c    
5' gcc gguc agugguucu gaca uuca caguu ugu 
   ||| |||| ||||||||| |||| |||| ||||| || a
3' cgg ccag ucaccagga uugu aagu guuaa acg 
      c    a         u    a    -     c    

Deep sequencing

244163 reads, 727 reads per million, 101 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The 5' end of the miRNA may be offset with respect to previous annotations.

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr12: 112130880-112130955 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-203

• mmu-mir-203: chr12: 112130880-112130955 [+]
• mmu-mir-203b: chr12: 112130887-112130946 [-]

Database links

• EntrezGene:Mirn203
• MGI:Mir203
• RNAcentral:URS000075A359_10090
• miRBase Tracker:MI0000246

Mature sequence mmu-miR-203-5p

• Accession: MIMAT0004547
• Previous IDs: mmu-miR-203*
• Sequence: 10 - agugguucuugacaguucaaca - 31
• Deep sequencing: 1688 reads, 54 experiments
• Evidence: experimental; cloned [2], Illumina [3-4]
• Database links:
  • RNAcentral:URS000024B126_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-203-5p
  • miRDB:mmu-miR-203-5p
  • microrna.org:mmu-miR-203-5p

Mature sequence mmu-miR-203-3p

• Accession: MIMAT0000236
• Previous IDs: mmu-miR-203
• Sequence: 48 - gugaaauguuuaggaccacuag - 69
• Deep sequencing: 242470 reads, 101 experiments
• Evidence: experimental; cloned [1-2], Illumina [3-4]
• Database links:
  • RNAcentral:URS00004DA9DB_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-203-3p.1
  • miRDB:mmu-miR-203-3p
  • microrna.org:mmu-miR-203-3p

References

1. PMID:12554859 "New microRNAs from mouse and human" Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T RNA. 9:175-179(2003).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).