Stem-loop sequence mmu-mir-122

Accession

MI0000256 (change log)

Previous IDs

mmu-mir-122a

Symbol

MGI:Mir122

Description

Mus musculus miR-122 stem-loop

Gene family

MIPF0000095; mir-122

Literature search

264 open access papers mention mmu-mir-122
(2413 sentences)

Stem-loop

         gg       c           -  uc 
5' agcugu  aguguga aaugguguuug ug  c
   ||||||  ||||||| ||||||||||| ||  a
3' ucgaua  ucacacu uuaccgcaaac ac  a
         aa       a           u  ca 

Deep sequencing

3730515 reads, 5.11e+03 reads per million, 93 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr18: 65248861-65248926 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-122

• mmu-mir-122: chr18: 65248861-65248926 [+]
• mmu-mir-122b: chr18: 65248863-65248921 [-]

Database links

• EntrezGene:Mir122a
• MGI:Mir122
• RNAcentral:URS000075A6F6_10090
• miRBase Tracker:MI0000256

Mature sequence mmu-miR-122-5p

• Accession: MIMAT0000246
• Previous IDs: mmu-miR-122a;mmu-miR-122
• Sequence: 6 - uggagugugacaaugguguuug - 27
• Deep sequencing: 3729985 reads, 93 experiments
• Evidence: experimental; cloned [1-2], Illumina [3-4]
• Database links:
  • RNAcentral:URS00003380CC_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-122-5p
  • miRDB:mmu-miR-122-5p
  • microrna.org:mmu-miR-122-5p

Mature sequence mmu-miR-122-3p

• Accession: MIMAT0017005
• Previous IDs: mmu-miR-122*
• Sequence: 41 - aaacgccauuaucacacuaaau - 62
• Deep sequencing: 529 reads, 20 experiments
• Evidence: experimental; Illumina [4]
• Database links:
  • RNAcentral:URS000035BB59_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-122-3p
  • miRDB:mmu-miR-122-3p

References

1. PMID:12007417 "Identification of tissue-specific microRNAs from mouse" Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T Curr Biol. 12:735-739(2002).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).