Stem-loop cel-mir-235

Accession

MI0000310

Description

Caenorhabditis elegans cel-mir-235 precursor miRNA

Gene family

MIPF0000367; mir-235

Literature search

2 open access papers mention cel-mir-235
(5 sentences)

Sequence

147028 reads, 846 reads per million, 16 experiments

uccgaagauaucaggaucAGGCCUUGGCUGAUUGCAAAAUUguucaccgugaaaauuaaaUAUUGCACUCUCCCCGGCCUGAucugagaguaaggcg
.((.......((((.((((((((..((..((.(((((((((.((((...)))))))).....))))).))..)).))))))))))))......))..

Structure

-u  gaagaua    g        UU  CU  U     -----    g    c 
  cc       ucag aucAGGCC  GG  GA UGCAA     AAUU uuca  
  ||       |||| ||||||||  ||  || |||||     |||| |||| c
  gg       aguc uAGUCCGG  CC  CU ACGUU     uuaa aagu  
gc  -aaugag    -        -C  CU  C     AUaaa    -    g 

Annotation confidence High

Genome context

chrI: 6162291-6162387 [-]

Mature cel-miR-235-3p

• Accession: MIMAT0000290
• Description: Caenorhabditis elegans cel-miR-235-3p mature miRNA
• Sequence: 61 - UAUUGCACUCUCCCCGGCCUGA - 82
• Evidence: experimental ; cloned [1], Northern [1], 454 [3], Illumina [4,6], CLIPseq [5]

Mature cel-miR-235-5p

• Accession: MIMAT0020331
• Description: Caenorhabditis elegans cel-miR-235-5p mature miRNA
• Sequence: 19 - AGGCCUUGGCUGAUUGCAAAAUU - 41
• Evidence: experimental ; Illumina [6]

References

1. PubMed ID: 12672692
   The microRNAs of Caenorhabditis elegans
   "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
   "Genes Dev (2003) 17:991-1008


2. PubMed ID: 12747828
   MicroRNAs and other tiny endogenous RNAs in C. elegans
   "Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D"
   "Curr Biol (2003) 13:807-818


3. PubMed ID: 17174894
   Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
   "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
   "Cell (2006) 127:1193-1207


4. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


5. PubMed ID: 20062054
   Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
   "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
   "Nat Struct Mol Biol (2010) 17:173-179


6. PubMed ID: 21307183
   Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer
   "Warf MB, Johnson WE, Bass BL"
   "RNA (2011) 17:563-577