Accession
MI0000311
Description
Caenorhabditis elegans
cel-mir-236 precursor miRNA
Gene family
MIPF0000232;
mir-236
Sequence
63853
reads,
809
reads per million, 15 experiments
ucggugaccgauguccagCGUCUUACCUGUUCAAUAUUUAGAcugacuaucaaagagaucUAAUACUGUCAGGUAAUGACGCUggauugucaugucau
...(((((.((((((((((((((((((((..((.((((.(((((...........)).))))))).)).))))))).))))))))).))))..)))))
...(((((.((((((((((((((((((((..((.((((.(((((...........)).))))))).)).))))))).))))))))).))))..)))))
Structure
ucg -c - - UU A U - gacu gugac gaug uccagCGUC UUACCUG CA UAUU AGA cu a ||||| |||| ||||||||| ||||||| || |||| ||| || u uacug cugu aggUCGCAG AAUGGAC GU AUAA Ucu ga c --- ua u U -U C - a gaaa
Annotation confidence
High
Do you think this miRNA is real?
Comments
This precursor sequence was predicted by comparative computational approaches [1,3]. The excised miRNA sequence was predicted to comprise bases 64 to 87, and the precise 5' and 3' ends were determined later [4]. Northern blotting confirmed that the strand containing the predicted miR is predominantly expressed.
Genome context
chrII: 7030180-7030277 [-]
Database links
Mature cel-miR-236-3p
| Accession | MIMAT0000291 |
| Description | Caenorhabditis elegans cel-miR-236-3p mature miRNA |
| Sequence | 61 - UAAUACUGUCAGGUAAUGACGCU - 83 |
| Evidence |
experimental
cloned [1-2,4], Northern [1,3], PCR [3], Illumina [5,7], CLIPseq [6] |
| Database links |
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| Predicted targets |
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Mature cel-miR-236-5p
| Accession | MIMAT0020332 |
| Description | Caenorhabditis elegans cel-miR-236-5p mature miRNA |
| Sequence | 19 - CGUCUUACCUGUUCAAUAUUUAGA - 42 |
| Evidence |
experimental
Illumina [7] |
| Database links |
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References
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