Stem-loop cel-mir-245

Accession

MI0000321

Description

Caenorhabditis elegans cel-mir-245 precursor miRNA mir-245

Gene
family

RF00816; mir-245

Literature search

1 open access papers mention cel-mir-245
(1 sentences)

Sequence

95933 reads, 555.0 reads per million, 91 experiments

cugaauucaauguuggagaGCUAUUUGCAAGGUACCUAAUUGUuugauuauugauucucaAUUGGUCCCCUCCAAGUAGCUCUauugcauuguuugc
.......((((((...(((((((((((...((.(((.(((((...((........)).)))))))).))...)))))))))))...)))))).....

Structure

cugaauu      ugg           CAA  U   U     Uuu  uua 
       caaugu   agaGCUAUUUG   GG ACC AAUUG   ga   u
       ||||||   |||||||||||   || ||| |||||   ||    
       guuacg   UCUCGAUGAAC   CC UGG UUAac   cu   u
--cguuu      uua           CUC  C   -     --u  uag 

Annotation confidence High

Genome context

chrI: 7887371-7887467 [+]

Mature cel-miR-245-5p

• Accession: MIMAT0020336
• Description: Caenorhabditis elegans cel-miR-245-5p mature miRNA
• Sequence: 20 - GCUAUUUGCAAGGUACCUAAUUGU - 43
• Evidence: experimental ; Illumina [5]

Mature cel-miR-245-3p

• Accession: MIMAT0000301
• Description: Caenorhabditis elegans cel-miR-245-3p mature miRNA
• Sequence: 61 - AUUGGUCCCCUCCAAGUAGCUCU - 83
• Evidence: experimental ; cloned [1-2], Northern [1], Illumina [3,5], CLIPseq [4]

References

1. PubMed ID: 12672692
   The microRNAs of Caenorhabditis elegans
   "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
   "Genes Dev (2003) 17:991-1008


2. PubMed ID: 17174894
   Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
   "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
   "Cell (2006) 127:1193-1207


3. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


4. PubMed ID: 20062054
   Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
   "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
   "Nat Struct Mol Biol (2010) 17:173-179


5. PubMed ID: 21307183
   Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer
   "Warf MB, Johnson WE, Bass BL"
   "RNA (2011) 17:563-577