miRBase entry: cel-mir-246

Stem-loop cel-mir-246


Accession
MI0000322
Description
Caenorhabditis elegans cel-mir-246 precursor miRNA
Gene family
MIPF0000260; mir-246

Literature search
6 open access papers mention cel-mir-246
(37 sentences)

Sequence

48838 reads, 579 reads per million, 12 experiments
aucugaauuauaaaacauCGCCUAACCGUUGUCAUGUAAUAuuucccagagaaaaugauaUUACAUGUUUCGGGUAGGAGCuguucaaacuuuggac
.((((((......((((.(.((((.(((....(((((((((((.............)))))))))))...))).)))).).)))).....)))))).

Structure
a      uuauaa    u G    A   UUGU           uccca 
 ucugaa      aaca C CCUA CCG    CAUGUAAUAuu     g
 ||||||      |||| | |||| |||    |||||||||||     a
 agguuu      uugu G GGAU GGC    GUACAUUauag     g
c      -caaac    C A    G   -UUU           uaaaa 


Annotation confidence High
Do you think this miRNA is real?
Comments
The extents of the dominant mature miRNA species are adjusted here in accordance with a large scale cloning and sequencing study [2].

Genome context
chrIV: 10940134-10940230 [+]

Database links

Mature cel-miR-246-3p

Accession MIMAT0000302
Description Caenorhabditis elegans cel-miR-246-3p mature miRNA
Sequence 61 - UUACAUGUUUCGGGUAGGAGC - 81
Evidence experimental
cloned [1-2], Northern [1], Illumina [3,5], CLIPseq [4]
Database links
Predicted targets

Mature cel-miR-246-5p

Accession MIMAT0020337
Description Caenorhabditis elegans cel-miR-246-5p mature miRNA
Sequence 19 - CGCCUAACCGUUGUCAUGUAAUA - 41
Evidence experimental
Illumina [5]
Database links

References

  1. PubMed ID: 12672692
    The microRNAs of Caenorhabditis elegans
    "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
    "Genes Dev (2003) 17:991-1008

  2. PubMed ID: 17174894
    Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
    "Cell (2006) 127:1193-1207

  3. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54

  4. PubMed ID: 20062054
    Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
    "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
    "Nat Struct Mol Biol (2010) 17:173-179

  5. PubMed ID: 21307183
    Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer
    "Warf MB, Johnson WE, Bass BL"
    "RNA (2011) 17:563-577