miRBase entry: cel-mir-268

Stem-loop cel-mir-268


Accession
MI0000348
Description
Caenorhabditis elegans cel-mir-268 precursor miRNA
Gene family
MIPF0000280; mir-268

Literature search
1 open access papers mention cel-mir-268
(1 sentences)

Sequence

1 reads, 0 reads per million, 1 experiments
ggaaguggcuuugaagcGGCAAGAAUUAGAAGCAGUUUGGUgucagacacacuacucacucacugcuucuuguuuuuucugcuuucuuugcuuuu
......(((...(((((((.((((((.(((((((((..((((..............)))).))))))))).)))))).)))))))....)))...

Structure
ggaagu   -uuu       C      U         UU    ucagac 
      ggc    gaagcGG AAGAAU AGAAGCAGU  GGUg      a
      |||    ||||||| |||||| |||||||||  ||||       
      ucg    uuucguc uuuuug ucuucguca  ucac      c
---uuu   uuuc       u      u         -c    ucauca 


Annotation confidence Not enough data
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Comments
This precursor sequence was predicted by comparative computational approaches. The excised miRNA sequence is predicted and the precise 5' or 3' end unknown. A PCR amplification protocol confirmed that the strand containing the predicted miR is predominantly expressed.

Genome context
chrV: 11137110-11137204 [+]

Database links

Mature cel-miR-268

Accession MIMAT0000324
Description Caenorhabditis elegans cel-miR-268 mature miRNA
Sequence 18 - GGCAAGAAUUAGAAGCAGUUUGGU - 41
Evidence experimental
PCR [1]

References

  1. PubMed ID: 12769849
    Computational and experimental identification of C. elegans microRNAs
    "Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J"
    "Mol Cell (2003) 11:1253-1263