Accession
MI0000362
Description
Drosophila melanogaster
dme-mir-133 precursor miRNA
Gene family
MIPF0000029;
mir-133
Literature search
17 open access papers mention dme-mir-133
(59 sentences)
(59 sentences)
Sequence
79220
reads,
1370
reads per million, 49 experiments
accugcaacacuguguguAGCUGGUUGACAUCGGGUCAGAUcuguuuuucaagcauUUGGUCCCCUUCAACCAGCUGUagccagugguugaugacaac
.....((((((((..(((((((((((((....(((((((((((........)).)))))).)))..)))))))))))))..)))).))))........
.....((((((((..(((((((((((((....(((((((((((........)).)))))).)))..)))))))))))))..)))).))))........
Structure
---accug - ug CAUC - - guu
caac acug uguAGCUGGUUGA GGG UCAGAU cu u
|||| |||| ||||||||||||| ||| |||||| ||
guug ugac aUGUCGACCAACU CCC GGUUua ga u
caacagua g cg --UC U c acu
Annotation confidence
High
Do you think this miRNA is real?
Comments
miR-133 was reported independently by three groups using computational prediction [2], Northern blot analysis [1] and cloning [3]. References [1] and [2] confirmed that the strand containing the predicted miR is predominantly expressed [1]. Reference [3] confirmed the ends of the excised miRNA by cloning.
Genome context
chr2L: 20616617-20616714 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dme-mir-133
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature dme-miR-133-3p
| Accession | MIMAT0000340 |
| Description | Drosophila melanogaster dme-miR-133-3p mature miRNA |
| Sequence | 57 - UUGGUCCCCUUCAACCAGCUGU - 78 |
| Evidence |
experimental
Northern [1,3], 454 [4-5], Illumina [5] |
| Database links |
|
| Predicted targets |
|
Mature dme-miR-133-5p
| Accession | MIMAT0020806 |
| Description | Drosophila melanogaster dme-miR-133-5p mature miRNA |
| Sequence | 19 - AGCUGGUUGACAUCGGGUCAGAU - 41 |
| Evidence | not_experimental |
| Database links |
|
References
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