miRBase entry: dme-mir-284

Stem-loop dme-mir-284


Accession
MI0000369
Description
Drosophila melanogaster dme-mir-284 precursor miRNA
Gene family
MIPF0000228; mir-284

Literature search
1 open access papers mention dme-mir-284
(1 sentences)

Sequence

203514 reads, 1969 reads per million, 46 experiments
guugcaguuCCUGGAAUUAAGUUGACUGUGUAGCCugugagggcaaggcuugaauaaugcuccugaaGUCAGCAACUUGAUUCCAGCAauugcggcccga
(((((((((.((((((((((((((.(((...(((((((....)).)))))...................))))))))))))))))).)))))))))....

Structure
----         C              A   ----------------UGU     -  g 
    guugcaguu CUGGAAUUAAGUUG CUG                   AGCCu gu a
    ||||||||| |||||||||||||| |||                   ||||| ||  
    cggcguuaA GACCUUAGUUCAAC GAC                   ucgga cg g
agcc         C              -   UGaaguccucguaauaagu     a  g 


Annotation confidence High
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Genome context
chr3R: 12551515-12551614 [-]

Database links

Mature dme-miR-284-3p

Accession MIMAT0000348
Description Drosophila melanogaster dme-miR-284-3p mature miRNA
Sequence 68 - GUCAGCAACUUGAUUCCAGCA - 88
Evidence experimental
Northern [1], 454 [2-3], Illumina [3]
Database links
Predicted targets

Mature dme-miR-284-5p

Accession MIMAT0020811
Description Drosophila melanogaster dme-miR-284-5p mature miRNA
Sequence 10 - CCUGGAAUUAAGUUGACUGUGUAGCC - 35
Evidence not_experimental
Database links

References

  1. PubMed ID: 17989254
    Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
    "Genome Res (2007) 17:1850-1864

  2. PubMed ID: 17989255
    Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
    "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
    "Genome Res (2007) 17:1865-1879

  3. PubMed ID: 12844358
    Computational identification of Drosophila microRNA genes
    "Lai EC, Tomancak P, Williams RW, Rubin GM"
    "Genome Biol (2003) 4:R42