Accession
MI0000374
Description
Drosophila melanogaster
dme-mir-79 precursor miRNA
Gene family
MIPF0000014;
mir-9
Literature search
12 open access papers mention dme-mir-79
(22 sentences)
(22 sentences)
Sequence
268065
reads,
20569
reads per million, 49 experiments
ugaagcugacuugccauuGCUUUGGCGCUUUAGCUGUAUGAuagauuuaaacuacuucaUAAAGCUAGAUUACCAAAGCAUuggcuucugcagguca
(((..(((....((((.((((((((...(((((((.((((((((.......)))..))))).)))))))...)))))))).)))).....))).)))
(((..(((....((((.((((((((...(((((((.((((((((.......)))..))))).)))))))...)))))))).)))).....))).)))
Structure
ag -acuu u CGC G -- au uga cug gcca uGCUUUGG UUUAGCU UAUGA uag u ||| ||| |||| |||||||| ||||||| ||||| ||| u acu gac cggu ACGAAACC AGAUCGA AUacu auc a -g gucuu U AUU A uc aa
Annotation confidence
High
Do you think this miRNA is real?
Comments
miR-79 was reported independently by three groups using computational prediction [2], Northern blot analysis [1] and cloning [3]. References [1] and [2] confirmed that the strand containing the predicted miR is predominantly expressed [1]. Reference [3] confirmed the ends of the excised miRNA by cloning.
Genome context
chr2L: 16698554-16698650 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from dme-mir-79
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature dme-miR-79-3p
| Accession | MIMAT0000352 |
| Description | Drosophila melanogaster dme-miR-79-3p mature miRNA |
| Sequence | 60 - UAAAGCUAGAUUACCAAAGCAU - 81 |
| Evidence |
experimental
Northern [1], cloned [3], 454 [4-5], Illumina [5] |
| Database links |
|
| Predicted targets |
|
Mature dme-miR-79-5p
| Accession | MIMAT0020814 |
| Description | Drosophila melanogaster dme-miR-79-5p mature miRNA |
| Sequence | 19 - GCUUUGGCGCUUUAGCUGUAUGA - 41 |
| Evidence | not_experimental |
| Database links |
|
References
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