miRBase entry: dme-mir-289

Stem-loop dme-mir-289


Accession
MI0000385
Description
Drosophila melanogaster dme-mir-289 precursor miRNA
Gene family
MIPF0000222; mir-289

Literature search
3 open access papers mention dme-mir-289
(33 sentences)

Sequence

gaguuuacaguaaaaUAAAUAUUUAAGUGGAGCCUGCGACUucagucccucugacugacugggguaagucacuugagcguuuguuggcacguaaaagac
...(((((.((..(((((((.(((((((((.((((..(...((((((.....)))))))..))))...))))))))).)))))))...)))))))....

Structure
-gag     a  -aa       A         --A    GC ACU      c 
    uuuac gu   aaUAAAU UUUAAGUGG   GCCU  G   ucaguc c
    ||||| ||   ||||||| |||||||||   ||||  |   |||||| u
    aaaug ca   uuguuug gaguucacu   uggg  c   agucag c
caga     -  cgg       c         gaa    gu ---      u 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This sequence is computationally predicted based on conservation in D. pseudoobscura. The precise 5' or 3' ends are unknown. Northern blotting confirmed that the strand containing the predicted miR is predominantly expressed.

Genome context
chr3L: 13620822-13620920 [+]

Database links

Mature dme-miR-289-5p

Accession MIMAT0000364
Description Drosophila melanogaster dme-miR-289-5p mature miRNA
Sequence 16 - UAAAUAUUUAAGUGGAGCCUGCGACU - 41
Evidence experimental
Northern [1]

References

  1. PubMed ID: 12844358
    Computational identification of Drosophila microRNA genes
    "Lai EC, Tomancak P, Williams RW, Rubin GM"
    "Genome Biol (2003) 4:R42