Stem-loop sequence mmu-mir-293

Accession

MI0000391 (change log)

Symbol

MGI:Mir293

Description

Mus musculus miR-293 stem-loop

Gene family

MIPF0000068; mir-290

Literature search

10 open access papers mention mmu-mir-293
(45 sentences)

Stem-loop

   u      u  gg    -      g    a      guuc 
5'  ucaauc gu  uacu caaacu ugug cauuuu    u
    |||||| ||  |||| |||||| |||| ||||||    u
3'  aguuag cg  guga guuuga acgc gugaag    u
   g      c  uu    u      g    c      aaug 

Deep sequencing

153450 reads, 1.17e+03 reads per million, 65 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr7: 3220343-3220422 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-293

• mmu-mir-290a: chr7: 3218626-3218708 [+]
• mmu-mir-290b: chr7: 3218638-3218695 [-]
• mmu-mir-291a: chr7: 3218919-3219000 [+]
• mmu-mir-292a: chr7: 3219189-3219270 [+]
• mmu-mir-292b: chr7: 3219198-3219259 [-]
• mmu-mir-291b: chr7: 3219482-3219560 [+]
• mmu-mir-293: chr7: 3220343-3220422 [+]
• mmu-mir-294: chr7: 3220641-3220724 [+]
• mmu-mir-295: chr7: 3220773-3220841 [+]

Database links

• EntrezGene:Mirn293
• MGI:Mir293
• RNAcentral:URS000075E52F_10090
• miRBase Tracker:MI0000391

Mature sequence mmu-miR-293-5p

• Accession: MIMAT0004573
• Previous IDs: mmu-miR-293*
• Sequence: 14 - acucaaacugugugacauuuug - 35
• Deep sequencing: 14042 reads, 31 experiments
• Evidence: experimental; cloned [2], Illumina [3-4]
• Database links:
  • RNAcentral:URS000034CD58_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-293-5p
  • miRDB:mmu-miR-293-5p
  • microrna.org:mmu-miR-293-5p

Mature sequence mmu-miR-293-3p

• Accession: MIMAT0000371
• Previous IDs: mmu-miR-293
• Sequence: 48 - agugccgcagaguuuguagugu - 69
• Deep sequencing: 139405 reads, 62 experiments
• Evidence: experimental; cloned [1-2], Northern [1], Illumina [3-4]
• Database links:
  • RNAcentral:URS0000492EAB_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-293-3p
  • miRDB:mmu-miR-293-3p
  • microrna.org:mmu-miR-293-3p

References

1. PMID:12919684 "Embryonic stem cell-specific MicroRNAs" Houbaviy HB, Murray MF, Sharp PA Dev Cell. 5:351-358(2003).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).