Stem-loop mmu-mir-297a-2

Accession

MI0000397

Symbol

MGI: Mir297a-2

Description

Mus musculus mmu-mir-297a-2 precursor miRNA mir-297

Gene
family

RF04217; mir-297

Literature search

12 open access papers mention mmu-mir-297a-2
(15 sentences)

Sequence

5500 reads, 49 reads per million, 85 experiments

cuguguguauAUGUAUGUGUGCAUGUGCAUGUguguauaugaguauacauauacauacgcacauacccauacaagcaugcacacaaaccc
.(((((((..((((.((((((.((((((..(((((((((((......)))))))))))))))))...)))))).))))))))))).....

Structure

----c       au    A      --C      AU           ag 
     ugugugu  AUGU UGUGUG   AUGUGC  GUguguauaug  u
     |||||||  |||| ||||||   ||||||  |||||||||||   
     acacacg  uacg acauac   uacacg  cauacauauac  a
cccaa       --    a      cca      --           au 

Annotation confidence Not enough data

Comments

Houbaviy et al. report that the cloned sequence of miR-297 is found over 20 times in the mouse genomic sequence [1]. This sequence appears to match several low complexity repetitive regions. Confidence in which loci actually express miR-297 is low because of the low complexity nature of the sequence.

Genome context

chr2: 10472254-10472343 [+]

Clustered miRNAs

26 other miRNAs are < 10 kb from mmu-mir-297a-2

Mature mmu-miR-297a-5p

• Accession: MIMAT0000375
• Description: Mus musculus mmu-miR-297a-5p mature miRNA
• Sequence: 11 - AUGUAUGUGUGCAUGUGCAUGU - 32
• Evidence: experimental ; cloned [1], Illumina [2-3]

References

1. PubMed ID: 12919684
   Embryonic stem cell-specific MicroRNAs
   "Houbaviy HB, Murray MF, Sharp PA"
   "Dev Cell (2003) 5:351-358