miRBase entry: dme-mir-31b

Stem-loop dme-mir-31b


Accession
MI0000410
Description
Drosophila melanogaster dme-mir-31b precursor miRNA
Gene family
MIPF0000064; mir-31

Literature search
6 open access papers mention dme-mir-31b
(10 sentences)

Sequence

146936 reads, 1314 reads per million, 47 experiments
caaauaaugaauuUGGCAAGAUGUCGGAAUAGCUGagagcacagcggaucgaacauuuuaucguccgaaaaaaugugauuauuuuugaaaagcGGCUAUGCCUCAUCUAGUCAAUugcauuacuuug
(((((((((...(((((.(((((..((.(((((((.........((((.(((........))))))).(((((((....)))))))......))))))).)).))))).)))))...))))).))))

Structure
    -     aau     A     UC  A       ----------------agagcacag    u   aca 
caaa uaaug   uUGGC AGAUG  GG AUAGCUG                         cgga cga   u
|||| |||||   ||||| |||||  || |||||||                         |||| |||    
guuu auuac   AACUG UCUAC  CC UAUCGGc                         gccu gcu   u
    c     guU     A     -U  G       gaaaaguuuuuauuaguguaaaaaa    -   auu 


Annotation confidence High
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Genome context
chrX: 8993305-8993431 [-]

Database links

Mature dme-miR-31b-5p

Accession MIMAT0000389
Description Drosophila melanogaster dme-miR-31b-5p mature miRNA
Sequence 14 - UGGCAAGAUGUCGGAAUAGCUG - 35
Evidence experimental
cloned [1], 454 [2-3], Illumina [3]
Database links
Predicted targets

Mature dme-miR-31b-3p

Accession MIMAT0020825
Description Drosophila melanogaster dme-miR-31b-3p mature miRNA
Sequence 94 - GGCUAUGCCUCAUCUAGUCAAU - 115
Evidence not_experimental
Database links

References

  1. PubMed ID: 12919683
    The small RNA profile during Drosophila melanogaster development
    "Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T"
    "Dev Cell (2003) 5:337-350

  2. PubMed ID: 17989254
    Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
    "Genome Res (2007) 17:1850-1864

  3. PubMed ID: 17989255
    Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
    "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
    "Genome Res (2007) 17:1865-1879