Stem-loop dme-mir-314

Accession

MI0000426

Description

Drosophila melanogaster dme-mir-314 precursor miRNA mir-314

Gene
family

RF00807; mir-314

Literature search

3 open access papers mention dme-mir-314
(3 sentences)

Sequence

12178 reads, 340 reads per million, 46 experiments

ucGUAACUUGUGUGGCUUCGAACUUACCuaguugaggaaaacucccaugucggauuuuguuaccucuggUAUUCGAGCCAAUAAGUUCGG
.((.(((((((.(((((.((((..((((.((.(((.((((..(((......))))))).))).))..)))))))))))))))))))))).

Structure

u  U       G     U    CU    -u  u   g    ac   ca 
 cG AACUUGU UGGCU CGAA  UACC  ag uga gaaa  ucc  u
 || ||||||| ||||| ||||  ||||  || ||| ||||  |||   
 GC UUGAAUA ACCGA GCUU  AUgg  uc auu uuuu  agg  g
G  -       -     -    --    uc  c   g    --   cu 

Annotation confidence High

Genome context

chr3L: 11773012-11773101 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dme-mir-314

Mature dme-miR-314-3p

• Accession: MIMAT0000406
• Description: Drosophila melanogaster dme-miR-314-3p mature miRNA
• Sequence: 70 - UAUUCGAGCCAAUAAGUUCGG - 90
• Evidence: experimental ; cloned [1], 454 [2-3], Illumina [3]

Mature dme-miR-314-5p

• Accession: MIMAT0020840
• Description: Drosophila melanogaster dme-miR-314-5p mature miRNA
• Sequence: 3 - GUAACUUGUGUGGCUUCGAACUUACC - 28
• Evidence: not_experimental

References

1. PubMed ID: 12919683
   The small RNA profile during Drosophila melanogaster development
   "Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T"
   "Dev Cell (2003) 5:337-350


2. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864


3. PubMed ID: 17989255
   Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
   "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
   "Genome Res (2007) 17:1865-1879