miRBase entry: dme-mir-317

Stem-loop dme-mir-317


Accession
MI0000429
Description
Drosophila melanogaster dme-mir-317 precursor miRNA
Gene family
MIPF0000144; mir-317

Literature search
11 open access papers mention dme-mir-317
(23 sentences)

Sequence

508336 reads, 10951 reads per million, 49 experiments
augcaacugccauUGGGAUACACCCUGUGCUCGCUuugaaugaaaugcaagcaagUGAACACAGCUGGUGGUAUCCAGUggccguuuggcau
(((((((.(((((((((...(((((((((.((((((.(..((.....))..))))))).)))))..))))...))))))))).)))..))))

Structure
    --   u         AUA    --     C      u aa  a 
augc  aac gccauUGGG   CACC  CUGUG UCGCUu g  ug a
||||  ||| |||||||||   ||||  ||||| |||||| |  || a
uacg  uug cggUGACCU   GUGG  GACAC AGUgaa c  ac u
    gu   c         AUG    UC     A      - ga  g 


Annotation confidence High
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Genome context
chr3R: 10091126-10091217 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dme-mir-317
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dme-miR-317-3p

Accession MIMAT0000409
Description Drosophila melanogaster dme-miR-317-3p mature miRNA
Sequence 56 - UGAACACAGCUGGUGGUAUCCAGU - 79
Evidence experimental
cloned [1], 454 [2-3], Illumina [3]
Database links
Predicted targets

Mature dme-miR-317-5p

Accession MIMAT0020843
Description Drosophila melanogaster dme-miR-317-5p mature miRNA
Sequence 14 - UGGGAUACACCCUGUGCUCGCU - 35
Evidence not_experimental
Database links

References

  1. PubMed ID: 12919683
    The small RNA profile during Drosophila melanogaster development
    "Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T"
    "Dev Cell (2003) 5:337-350

  2. PubMed ID: 17989254
    Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
    "Genome Res (2007) 17:1850-1864

  3. PubMed ID: 17989255
    Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
    "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
    "Genome Res (2007) 17:1865-1879