Stem-loop dme-mir-318

Accession

MI0000430

Description

Drosophila melanogaster dme-mir-318 precursor miRNA

Literature search

2 open access papers mention dme-mir-318
(2 sentences)

Sequence

769975 reads, 5212 reads per million, 49 experiments

uuuaugGGAUACACACAGUUCAGUUUUGucacacuucaagcaUCACUGGGCUUUGUUUAUCUCAugag
.((((((((((.(((.((((((((..(((..........)))..)))))))).))).)))))))))).

Structure

u          C   C        UU   caca 
 uuaugGGAUA ACA AGUUCAGU  UGu    c
 |||||||||| ||| ||||||||  |||     
 aguACUCUAU UGU UCGGGUCA  acg    u
g          U   U        CU   aacu 

Annotation confidence Medium

Genome context

chr3R: 10408302-10408369 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dme-mir-318

Mature dme-miR-318-3p

• Accession: MIMAT0000410
• Description: Drosophila melanogaster dme-miR-318-3p mature miRNA
• Sequence: 43 - UCACUGGGCUUUGUUUAUCUCA - 64
• Evidence: experimental ; cloned [1], 454 [2-3], Illumina [3]

Mature dme-miR-318-5p

• Accession: MIMAT0020844
• Description: Drosophila melanogaster dme-miR-318-5p mature miRNA
• Sequence: 7 - GGAUACACACAGUUCAGUUUUG - 28
• Evidence: not_experimental

References

1. PubMed ID: 12919683
   The small RNA profile during Drosophila melanogaster development
   "Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T"
   "Dev Cell (2003) 5:337-350


2. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864


3. PubMed ID: 17989255
   Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
   "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
   "Genome Res (2007) 17:1865-1879