Stem-loop sequence dme-mir-318

Accession

MI0000430 (change log)

Description

Drosophila melanogaster miR-318 stem-loop

Gene family

MIPF0000259; mir-318

Literature search

2 open access papers mention dme-mir-318
(2 sentences)

Stem-loop

   u          c   c        uu   caca 
5'  uuaugggaua aca aguucagu  ugu    c
    |||||||||| ||| ||||||||  |||     
3'  aguacucuau ugu ucggguca  acg    u
   g          u   u        cu   aacu 

Deep sequencing

829914 reads, 5.41e+03 reads per million, 49 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Release_6; GCA_000001215.4): chr3R: 10408302-10408369 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dme-mir-318

• dme-mir-994: chr3R: 10408137-10408227 [+]
• dme-mir-318: chr3R: 10408302-10408369 [+]

Database links

• RNAcentral:URS00003E3F19_7227
• miRBase Tracker:MI0000430

Mature sequence dme-miR-318-5p

• Accession: MIMAT0020844
• Sequence: 7 - ggauacacacaguucaguuuug - 28
• Deep sequencing: 1291 reads, 24 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00001A8D4C_7227

Mature sequence dme-miR-318-3p

• Accession: MIMAT0000410
• Previous IDs: dme-miR-318
• Sequence: 43 - ucacugggcuuuguuuaucuca - 64
• Deep sequencing: 828611 reads, 49 experiments
• Evidence: experimental; cloned [1], 454 [2-3], Illumina [3]
• Database links:
  • RNAcentral:URS000033D06C_7227
• Predicted targets:
  • TargetScanFly:dme-miR-318
  • microrna.org:dme-miR-318-3p

References

1. PMID:12919683 "The small RNA profile during Drosophila melanogaster development" Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T Dev Cell. 5:337-350(2003).
2. PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
3. PMID:17989255 "Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes" Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M Genome Res. 17:1865-1879(2007).