Stem-loop cbr-mir-1

Accession

MI0000493

Description

Caenorhabditis briggsae cbr-mir-1 precursor miRNA

Literature search

5 open access papers mention cbr-mir-1
(26 sentences)

Sequence

34647 reads, 3682.0 reads per million, 3 experiments

ugcugugccgagcugCAUACUUCCUUACAUGCCCAUAcuguacugugaauggauaUGGAAUGUAAAGAAGUAUGUAgaacggaaucuaacggcg
.(((((.(((..(((((((((((.((((((..(((((((((.......)))).))))).)))))).)))))))))))..)))......))))).

Structure

u     -----g   ag           C      GC     -    ac 
 gcugu      ccg  cugCAUACUUC UUACAU  CCAUA cugu  u
 |||||      |||  ||||||||||| ||||||  ||||| ||||  g
 cggca      ggc  gAUGUAUGAAG AAUGUA  GGUau ggua  u
g     aucuaa   aa           A      -A     a    ag 

Annotation confidence High

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1,2]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrI: 9430166-9430259 [-]

Mature cbr-miR-1-5p

• Accession: MIMAT0053512
• Description: Caenorhabditis briggsae cbr-miR-1-5p mature miRNA
• Sequence: 16 - CAUACUUCCUUACAUGCCCAUA - 37
• Evidence: not_experimental

Mature cbr-miR-1-3p

• Accession: MIMAT0000465
• Description: Caenorhabditis briggsae cbr-miR-1-3p mature miRNA
• Sequence: 56 - UGGAAUGUAAAGAAGUAUGUA - 76
• Evidence: not_experimental

References

1. PubMed ID: 11679671
   An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
   "Lau NC, Lim LP, Weinstein EG, Bartel DP"
   "Science (2001) 294:858-862


2. PubMed ID: 11679672
   An extensive class of small RNAs in Caenorhabditis elegans
   "Lee RC, Ambros V"
   "Science (2001) 294:862-864