miRBase entry: cbr-mir-42

Stem-loop cbr-mir-42


Accession
MI0000495
Description
Caenorhabditis briggsae cbr-mir-42 precursor miRNA
Gene family
MIPF0000233; mir-42


Sequence

uaacccuugucggaccuuuguggguguucgccuuuucggugaaguuacugaaugcuucuuCACCGGGUUAACAUCUACAGagguccuaaaggguuc
.(((((((...(((((((((((((((((.(((....((((((((...(.....)...))))))))))).)))))))))))))))))..))))))).

Structure
u       guc                 c   uuuu        uua u 
 aacccuu   ggaccuuuguggguguu gcc    cggugaag   c g
 |||||||   ||||||||||||||||| |||    ||||||||   | a
 uugggaa   ccuggaGACAUCUACAA UGG    GCCACuuc   g a
c       -au                 U   ----        uuc u 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context
chrII: 8891358-8891453 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from cbr-mir-42
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-42

Accession MIMAT0000467
Description Caenorhabditis briggsae cbr-miR-42 mature miRNA
Sequence 61 - CACCGGGUUAACAUCUACAG - 80
Evidence not_experimental

References

  1. PubMed ID: 11679671
    An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
    "Lau NC, Lim LP, Weinstein EG, Bartel DP"
    "Science (2001) 294:858-862