miRBase entry: cbr-mir-45-1

Stem-loop cbr-mir-45-1

Accession

MI0000498

Description

Caenorhabditis briggsae cbr-mir-45-1 precursor miRNA

Gene family

MIPF0000132; mir-44

Sequence

agugccacgcuggaugugcucguuagucauaguaaccucaucaauucaggcuuaUGACUAGAGACACAUUCAGCUuggcgcc
.((((((.((((((((((.((.((((((((((...(((.........))).)))))))))).)))))))))))).)))))).

Structure

a      c          c  g          uaa   cau 
 gugcca gcuggaugug uc uuagucauag   ccu   c
 |||||| |||||||||| || ||||||||||   |||   a
 cgcggu CGACUUACAC AG GAUCAGUauu   gga   a
c      U          -  A          --c   cuu

Annotation confidence Not enough data

Do you think this miRNA is real?

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrII: 8900352-8900433 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from cbr-mir-45-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbr-miR-45

Accession	MIMAT0000470
Description	Caenorhabditis briggsae cbr-miR-45 mature miRNA
Sequence	55 - UGACUAGAGACACAUUCAGCU - 75
Evidence	not_experimental

References

PubMed ID: 11679671
An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
"Lau NC, Lim LP, Weinstein EG, Bartel DP"
"Science (2001) 294:858-862