miRBase entry: cbr-mir-77-1

Stem-loop cbr-mir-77-1


Accession
MI0000515
Description
Caenorhabditis briggsae cbr-mir-77-1 precursor miRNA
Gene family
MIPF0000272; mir-77


Sequence

gagcugugaauuuggauagcugugcucugaggaaauaacaauagucacaccccaugucauUUCAUCAGGCCAUAGCUGUCCAaauuucucgguucg
((((((.(((((((((((((((((.(((((.(((((.(((..............))).))))).))))).)))))))))))))))))..)))))).

Structure
-      -u                 c     g     a   auaguc 
 gagcug  gaauuuggauagcugug ucuga gaaau aca      a
 ||||||  ||||||||||||||||| ||||| ||||| |||       
 cuuggc  uuuaaACCUGUCGAUAC GGACU CUUua ugu      c
g      uc                 C     A     c   acccca 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae. The hairpin precursor sequence represented here matches two positions on FPC contig 2260 in the C. briggsae genome sequence.

Genome context
chrII: 14395434-14395529 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cbr-mir-77-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-77

Accession MIMAT0000485
Description Caenorhabditis briggsae cbr-miR-77 mature miRNA
Sequence 61 - UUCAUCAGGCCAUAGCUGUCCA - 82
Evidence not_experimental

References

  1. PubMed ID: 11679671
    An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
    "Lau NC, Lim LP, Weinstein EG, Bartel DP"
    "Science (2001) 294:858-862