Stem-loop sequence cbr-mir-87

Accession MI0000523
Description Caenorhabditis briggsae miR-87 stem-loop
Gene family MIPF0000152; mir-87
Stem-loop 
-  u    cccac     -       u     c u    a   -  - ugu 
 gg ugug     ccggc cgccuga acuuu g cuca ccu cg c   c
 || ||||     ||||| ||||||| ||||| | |||| ||| || |   a
 cc acac     ggccg guggacu ugaaa c gagu gga gc g   g
a  c    ---aa     u       u     - -    -   u  u uaa
Get sequence
Deep sequencing
19 reads, 1 experiments
Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context
Coordinates (WS200) Overlapping transcripts
chrV: 6389696-6389790 [+]
intergenic

Mature sequence cbr-miR-87

Accession MIMAT0000492
Sequence

61 -  

gugagcaaaguuucaggugu

 - 80

Get sequence
Deep sequencing 14 reads, 1 experiments
Evidence by similarity; MI0000058

References

1
PMID:11679672 "An extensive class of small RNAs in Caenorhabditis elegans" Lee RC, Ambros V Science. 294:862-864(2001).