Stem-loop cbr-mir-87

Accession

MI0000523

Description

Caenorhabditis briggsae cbr-mir-87 precursor miRNA

Literature search

2 open access papers mention cbr-mir-87
(2 sentences)

Sequence

29833 reads, 2786.0 reads per million, 3 experiments

gguugugcccacccggcCGCCUGAUACUUUCGUCUCAACCUcgcugucagaaugucguagGUGAGCAAAGUUUCAGGUGUGCcggaacacaccca
((.((((.....((((((((((((.(((((.(.((((.((((((.........).)).))))))))))))).))))))).)))))..)))).)).

Structure

-  u    cccac     -       U     C U    A   -  - ugu 
 gg ugug     ccggc CGCCUGA ACUUU G CUCA CCU cg c   c
 || ||||     ||||| ||||||| ||||| | |||| ||| || |   a
 cc acac     ggcCG GUGGACU UGAAA C GAGU Gga gc g   g
a  c    ---aa     U       U     - -    -   u  u uaa 

Annotation confidence High

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrV: 8974017-8974111 [+]

Mature cbr-miR-87-5p

• Accession: MIMAT0053539
• Description: Caenorhabditis briggsae cbr-miR-87-5p mature miRNA
• Sequence: 18 - CGCCUGAUACUUUCGUCUCAACCU - 41
• Evidence: not_experimental

Mature cbr-miR-87-3p

• Accession: MIMAT0000492
• Description: Caenorhabditis briggsae cbr-miR-87-3p mature miRNA
• Sequence: 61 - GUGAGCAAAGUUUCAGGUGUGC - 82
• Evidence: not_experimental

References

1. PubMed ID: 11679672
   An extensive class of small RNAs in Caenorhabditis elegans
   "Lee RC, Ambros V"
   "Science (2001) 294:862-864