Stem-loop cbr-mir-228

Accession

MI0000526

Description

Caenorhabditis briggsae cbr-mir-228 precursor miRNA

Gene family

MIPF0000292; mir-228

Literature search

1 open access papers mention cbr-mir-228
(3 sentences)

Sequence

aucccacccuguucgcAAUGGCACUGCAUGAAUUCACGGaugcaaagcgacagaccgcggaucaugcgguaccauagcugacgguggugagau
(((.(((((((((.((.((((.(((((((((.(((.(((.((........))..))).)))))))))))).)))).)).))))).)))).)))

Structure

   c    -     c  A    C         A   A   -a  caa 
auc cacc cuguu gc AUGG ACUGCAUGA UUC CGG  ug   a
||| |||| ||||| || |||| ||||||||| ||| |||  ||    
uag gugg ggcag cg uacc uggcguacu agg gcc  ac   g
   a    u     u  a    a         -   c   ag  agc 

Annotation confidence Not enough data

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrIV: 6041090-6041182 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cbr-mir-228

Mature cbr-miR-228

• Accession: MIMAT0000495
• Description: Caenorhabditis briggsae cbr-miR-228 mature miRNA
• Sequence: 17 - AAUGGCACUGCAUGAAUUCACGG - 39
• Evidence: not_experimental

References