Stem-loop cbr-mir-230

Accession

MI0000527

Description

Caenorhabditis briggsae cbr-mir-230 precursor miRNA

Gene family

MIPF0000306; mir-230

Sequence

aaaaugccuuaccgauacuuggucgacaauuuaauaguaucugauuaauugauggauaGUAUUAGUUGUGCGACCAGGAAAugguaugagcauuuc
.(((((((.(((((...((((((((((((((.((((.(((((.(((....)))))))).)))))))))).))))))))...))))).).)))))).

Structure

a      - u     aua        -      u    g     g   a 
 aaaugc c uaccg   cuuggucg acaauu aaua uaucu auu a
 |||||| | |||||   |||||||| |||||| |||| ||||| |||  
 uuuacg g auggu   GGACCAGC UGUUGA UUAU auagg uag u
c      a u     AAA        G      -    G     -   u 

Annotation confidence Not enough data

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrX: 11132705-11132800 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cbr-mir-230

Mature cbr-miR-230

• Accession: MIMAT0000496
• Description: Caenorhabditis briggsae cbr-miR-230 mature miRNA
• Sequence: 59 - GUAUUAGUUGUGCGACCAGGAAA - 81
• Evidence: not_experimental

References