miRBase entry: cbr-mir-232-1

Stem-loop cbr-mir-232-1


Accession
MI0000528
Description
Caenorhabditis briggsae cbr-mir-232-1 precursor miRNA
Gene family
MIPF0000311; mir-232


Sequence

auucaagauuucggaucuccguaguuuugaccauuuuauccaaccuaauaaugugaUAAAUGCAUCUUAACUGCGGUGAucuggauuuugugaac
.(((((((.((((((((.((((((((..((....((((((((.........)).))))))....))..)))))))).)))))))).))).)))).

Structure
a    -   u        u        uu  ccau      -  acc 
 uuca aga uucggauc ccguaguu  ga    uuuauc ca   u
 |||| ||| |||||||| ||||||||  ||    |||||| ||   a
 aagu uuu aggucuAG GGCGUCAA  CU    AAAUag gu   a
c    g   u        U        UU  ACGU      u  aau 


Annotation confidence Not enough data
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Comments
This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae. The hairpin precursor sequence represented here matches two positions on FPC contig 143 in the C. briggsae genome sequence.

Genome context
chrIV: 7400643-7400737 [+]

Database links

Mature cbr-miR-232

Accession MIMAT0000497
Description Caenorhabditis briggsae cbr-miR-232 mature miRNA
Sequence 57 - UAAAUGCAUCUUAACUGCGGUGA - 79
Evidence not_experimental

References