Stem-loop cbr-mir-248

Accession

MI0000536

Description

Caenorhabditis briggsae cbr-mir-248 precursor miRNA

Gene family

MIPF0000262; mir-248

Literature search

1 open access papers mention cbr-mir-248
(1 sentences)

Sequence

ugcaaacugauauucacgauaagcgcuauccuuccguuguauucaagcuugguugucgagUACACGUGCUCGGAUAACGCUCAucgagucugaucgguuauguu
.((((((((((...(.((((.((((.(((((..((((.((((((..((......)).))))))))).)...))))).)))).)))).)....))))))).))).

Structure

u   -       -auu a    a    c     -uu -   u      aa  uu 
 gca aacugau    c cgau agcg uaucc   c cgu guauuc  gc  g
 ||| |||||||    | |||| |||| |||||   | ||| ||||||  ||   
 ugu uuggcua    g gcuA UCGC AUAGG   G GCA CAUgag  ug  g
u   a       gucu a    C    A     CUC U   -      -c  uu 

Annotation confidence Not enough data

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrX: 4543318-4543421 [+]

Mature cbr-miR-248

• Accession: MIMAT0000504
• Description: Caenorhabditis briggsae cbr-miR-248 mature miRNA
• Sequence: 61 - UACACGUGCUCGGAUAACGCUCA - 83
• Evidence: not_experimental

References