Stem-loop sequence cbr-mir-248

Accession

MI0000536 (change log)

Description

Caenorhabditis briggsae miR-248 stem-loop

Gene family

MIPF0000262; mir-248

Literature search

1 open access papers mention cbr-mir-248
(1 sentences)

Stem-loop

   u   -       -auu a    a    c     -uu -   u      aa  uu 
5'  gca aacugau    c cgau agcg uaucc   c cgu guauuc  gc  g
    ||| |||||||    | |||| |||| |||||   | ||| ||||||  ||   
3'  ugu uuggcua    g gcua ucgc auagg   g gca caugag  ug  g
   u   a       gucu a    c    a     cuc u   -      -c  uu 

Confidence

Annotation confidence: not enough data

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Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

• Coordinates (CB4; GCA_000004555.3): chrX: 4543318-4543421 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0000536

Mature sequence cbr-miR-248

• Accession: MIMAT0000504
• Sequence: 61 - uacacgugcucggauaacgcuca - 83
• Evidence: by similarity; MI0000324