Stem-loop sequence mmu-mir-325

Accession

MI0000597 (change log)

Symbol

MGI:Mir325

Description

Mus musculus miR-325 stem-loop

Gene family

MIPF0000147; mir-325

Literature search

6 open access papers mention mmu-mir-325
(18 sentences)

Stem-loop

   ----------a              cc   u                uu gug 
5'            uauagugcuugguu  uag aggugcucaguaagug  u   a
              ||||||||||||||  ||| ||||||||||||||||  |    
3'            gugucacgaacuaa  auc uccacgaguuauuugc  a   c
   ggucucggauc              cu   c                uu aua 

Deep sequencing

1730 reads, 0 reads per million, 32 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chrX: 105379082-105379179 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000043700 ; RP23-316B4.2-004; intron 2

  OTTMUST00000043699 ; RP23-316B4.2-003; intron 3

  OTTMUST00000043697 ; RP23-316B4.2-001; intron 4

  OTTMUST00000043698 ; RP23-316B4.2-002; intron 4

  ENSMUST00000130264 ; 5330434G04Rik-004; intron 2

  ENSMUST00000150604 ; 5330434G04Rik-003; intron 3

  ENSMUST00000142109 ; 5330434G04Rik-002; intron 4

  ENSMUST00000136406 ; 5330434G04Rik-001; intron 4

Database links

• EntrezGene:Mirn325
• MGI:Mir325
• RNAcentral:URS000075B96F_10090
• miRBase Tracker:MI0000597

Mature sequence mmu-miR-325-5p

• Accession: MIMAT0000558
• Previous IDs: mmu-miR-325;mmu-miR-325*
• Sequence: 16 - ccuaguaggugcucaguaagugu - 38
• Deep sequencing: 665 reads, 22 experiments
• Evidence: experimental; Illumina [3-4]
• Database links:
  • RNAcentral:URS00004C44A8_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-325-5p
  • miRDB:mmu-miR-325-5p
  • microrna.org:mmu-miR-325-5p

Mature sequence mmu-miR-325-3p

• Accession: MIMAT0004640
• Previous IDs: mmu-miR-325
• Sequence: 54 - uuuauugagcaccuccuaucaa - 75
• Deep sequencing: 1062 reads, 28 experiments
• Evidence: experimental; cloned [2], Illumina [3-4]
• Database links:
  • RNAcentral:URS000060DCA0_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-325-3p
  • miRDB:mmu-miR-325-3p
  • microrna.org:mmu-miR-325-3p

References

1. PMID:14691248 "Identification of many microRNAs that copurify with polyribosomes in mammalian neurons" Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G Proc Natl Acad Sci U S A. 101:360-365(2004).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).