miRBase entry: rno-mir-326

Stem-loop rno-mir-326


Accession
MI0000599
Description
Rattus norvegicus rno-mir-326 precursor miRNA
Gene family
MIPF0000143; mir-326

Literature search
14 open access papers mention rno-mir-326
(104 sentences)

Sequence

53172 reads, 82 reads per million, 484 experiments
cucaucugucuguggggcuGGGGGCAGGGCCUUUGUGAAggcggguuaugcucagaucgCCUCUGGGCCCUUCCUCCAGUcccgaggcagauuua
...((((((((.((((((((((((.(((((((......((((((............))))))..))))))).))))))))))))))))))))...

Structure
cuc        g            C       UUGUGA      guuau 
   aucugucu uggggcuGGGGG AGGGCCU      Aggcgg     g
   |||||||| |||||||||||| |||||||      ||||||      
   uagacgga gcccUGACCUCC UCCCGGG      UCCgcu     c
auu        -            U       ----UC      agacu 


Annotation confidence Not enough data
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Genome context
chr1: 164518401-164518495 [+]

Database links

Mature rno-miR-326-5p

Accession MIMAT0017028
Description Rattus norvegicus rno-miR-326-5p mature miRNA
Sequence 20 - GGGGGCAGGGCCUUUGUGAA - 39
Evidence experimental
SOLiD [3]

Mature rno-miR-326-3p

Accession MIMAT0000560
Description Rattus norvegicus rno-miR-326-3p mature miRNA
Sequence 60 - CCUCUGGGCCCUUCCUCCAGU - 80
Evidence experimental
cloned [1-2], Northern [1], SOLiD [3]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 14691248
    Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
    "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
    "Proc Natl Acad Sci U S A (2004) 101:360-365

  3. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249