Stem-loop sequence rno-mir-328a

Accession MI0000602
Previous IDs rno-mir-328
Description Rattus norvegicus miR-328a stem-loop
Gene family MIPF0000203; mir-328
Stem-loop 
---     -      -------     ga     u     agaaa  au 
   ugggg cagggg       ggcag  ggggc caggg     gc  c
   ||||| ||||||       |||||  ||||| |||||     ||  u
   acccc gucccc       ccguc  ucccg guccc     cg  a
uaa     u      ugccuuc     uc     -     -----  ac
Get sequence
Genome context
Coordinates (RGSC3.4) Overlapping transcripts
19: 35122554-35122637 [-]
antisense
ENSRNOT00000021362 ; Elmo3; intron 13
ENSRNOT00000021362 ; Elmo3; intron 13
ENSRNOT00000021362 ; Elmo3; intron 13
Clustered miRNAs
< 10kb from rno-mir-328a
rno-mir-328a 19: 35122554-35122637 [-]
rno-mir-6318 19: 35121980-35122088 [-]
Database links
  • ENTREZGENE: 100314218;Mir328

Mature sequence rno-miR-328a-5p

Accession MIMAT0017029
Previous IDs rno-miR-328a*
Sequence

8 -  

ggggggcaggaggggcuca

 - 26

Get sequence
Evidence experimental; SOLiD [3]
Predicted targets

Mature sequence rno-miR-328a-3p

Accession MIMAT0000564
Previous IDs rno-miR-328;rno-miR-328a
Sequence

48 -  

cuggcccucucugcccuuccgu

 - 69

Get sequence
Evidence experimental; cloned [1-2], Northern [1], SOLiD [3]
Validated targets
Predicted targets

References

1
PMID:14691248 "Identification of many microRNAs that copurify with polyribosomes in mammalian neurons" Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G Proc Natl Acad Sci U S A. 101:360-365(2004).
2
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).