Stem-loop rno-mir-336

Accession

MI0000613

Description

Rattus norvegicus rno-mir-336 precursor miRNA

Literature search

1 open access papers mention rno-mir-336
(1 sentences)

Sequence

20 reads, 2 reads per million, 18 experiments

augugaccgugccucUCACCCUUCCAUAUCUAGUCUcugagaaaaaugaagACUGGAUUCCAUGAAGGGAUGUGAggccuggaaacuggagcuuua
..((..(((.(((((.((((((((...((((((((((..........).))))))))).....)))))).)).))))).)))..))..........

Structure

--------au  ga   u     U  -      --CAU         - ugag 
          gu  ccg gccuc CA CCCUUC     AUCUAGUCU c    a
          ||  ||| ||||| || ||||||     ||||||||| |     
          ca  ggu cggAG GU GGGAAG     UAGGUCAga g    a
auuucgaggu  aa   c     U  A      UACCU         a uaaa 

Annotation confidence Not enough data

Comments

Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1].

Genome context

chr10: 35349756-35349851 [+]

Mature rno-miR-336-5p

• Accession: MIMAT0000576
• Description: Rattus norvegicus rno-miR-336-5p mature miRNA
• Sequence: 16 - UCACCCUUCCAUAUCUAGUCU - 36
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-336-3p

• Accession: MIMAT0017034
• Description: Rattus norvegicus rno-miR-336-3p mature miRNA
• Sequence: 52 - ACUGGAUUCCAUGAAGGGAUGUGA - 75
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 14691248
   Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
   "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
   "Proc Natl Acad Sci U S A (2004) 101:360-365


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249