Stem-loop osa-MIR156a

Accession

MI0000653

Description

Oryza sativa osa-MIR156a precursor miRNA

Literature search

135 open access papers mention osa-MIR156a
(726 sentences)

Sequence

7922397 reads, 31080.0 reads per million, 142 experiments

ggagggUGACAGAAGAGAGUGAGCACAcgugguuguuuccuugcauaaaugaugccuaugcuuggagcuacgcguGCUCACUUCUCUCUCUGUCAccucc
(((((.((((((((((((((((((((.((((((....(((..(((((.........)))))..))))))))).)))))))).))))).))))))))))))

Structure

     g       -     -        A      uguu   uu     aau 
ggagg UGACAGA AGAGA GUGAGCAC cguggu    ucc  gcaua   g
||||| ||||||| ||||| |||||||| ||||||    |||  |||||   a
ccucc ACUGUCU UCUCU CACUCGug gcaucg    agg  cguau   u
     -       C     U        c      ----   uu     ccg 

Annotation confidence High

Comments

The stem-loop sequence represented here is predicted based on homology to miRNAs cloned from Arabidopsis [1]. Its expression has not been verified in rice.

Genome context

1: 22524147-22524246 [-]

Mature osa-miR156a-5p

• Accession: MIMAT0000618
• Description: Oryza sativa osa-miR156a-5p mature miRNA
• Sequence: 7 - UGACAGAAGAGAGUGAGCACA - 27
• Evidence: not_experimental

Mature osa-miR156a-3p

• Accession: MIMAT0055904
• Description: Oryza sativa osa-miR156a-3p mature miRNA
• Sequence: 76 - GCUCACUUCUCUCUCUGUCA - 95
• Evidence: experimental ; unknown

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626