Stem-loop sequence osa-MIR156d

Accession

MI0000656 (change log)

Description

Oryza sativa miR156d stem-loop

Gene family

MIPF0000008; MIR156

Literature search

120 open access papers mention osa-MIR156d
(699 sentences)

Stem-loop

       --a      cau    ------u        -   -         a     ugau  c   c   a 
5' ggag   agcucu   gaga       ugacagaa gag agugagcac cggcg    gg cgg aua a
   ||||   ||||||   ||||       |||||||| ||| ||||||||| |||||    || ||| ||| a
3' ccuc   ucggga   cucu       acugucuu cuc ucacucgug gccgc    cc gcc uau u
       aac      -cu    uucuccc        u   c         c     ---u  u   c   c 

Deep sequencing

568804 reads, 3.91e+05 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Comments

The stem-loop sequence represented here is predicted based on homology to miRNAs cloned from Arabidopsis [1]. Its expression has not been verified in rice.

Genome context

• Coordinates (MSU7): Chr2: 4512884-4513012 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0000656

Mature sequence osa-miR156d

• Accession: MIMAT0000621
• Sequence: 20 - ugacagaagagagugagcac - 39
• Deep sequencing: 568666 reads, 2 experiments
• Evidence: by similarity; MI0000183
• Database links:
  • RNAcentral:URS000020F5A7_39947

References

1. PMID:12101121 "MicroRNAs in plants" Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP Genes Dev. 16:1616-1626(2002).