miRBase entry: osa-MIR164a

Stem-loop osa-MIR164a


Accession
MI0000668
Description
Oryza sativa osa-MIR164a precursor miRNA
Gene family
MIPF0000045; MIR164

Literature search
73 open access papers mention osa-MIR164a
(320 sentences)

Sequence

2746 reads, 1892 reads per million, 2 experiments
gugagaaggaccgcguUGGAGAAGCAGGGCACGUGCAugcauauguucaucaucaucuucuuccuccuccucuagcuccagccuuguguggguuggaaguuuagauagaacucgcacugcacguggucuccuucuccaucccggucuuuuucucac
(((((((((((((.(.((((((((.(((.(((((((((((....(((((((......................(((((((((((.....))))))).))))..))).))))..))).)))))))).))).)))))))).).))))))..)))))))

Structure
       --      c u        C   G        -   auau    -   aucaucuucuuccuccuccucu    -       u 
gugagaa  ggaccg g UGGAGAAG AGG CACGUGCA ugc    guuc auc                      agcu ccagccu g
|||||||  |||||| | |||||||| ||| |||||||| |||    |||| |||                      |||| ||||||| u
cacucuu  ucuggc c accucuuc ucu gugcacgu acg    caag uag                      uuga gguuggg g
       uu      c u        c   g        c   --cu    a   --------------------au    a       u 


Annotation confidence Not enough data
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Comments
The stem-loop sequence represented here is predicted based on homology to miRNAs cloned from Arabidopsis [1]. Its expression has not been verified in rice.

Genome context
Chr7: 28523341-28523496 [-]

Database links

Mature osa-miR164a

Accession MIMAT0000633
Description Oryza sativa osa-miR164a mature miRNA
Sequence 17 - UGGAGAAGCAGGGCACGUGCA - 37
Evidence not_experimental
Database links

References

  1. PubMed ID: 12101121
    MicroRNAs in plants
    "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
    "Genes Dev (2002) 16:1616-1626