Stem-loop sequence osa-MIR166f

Accession

MI0000675 (change log)

Description

Oryza sativa miR166f stem-loop

Gene family

MIPF0000004; MIR166

Literature search

70 open access papers mention osa-MIR166f
(257 sentences)

Stem-loop

   -    cauc        a      uc      c          a    a   gu 
5'  cgau    uuguugag ggaaug  gucugg cugagaucgu ccac gug  g
    ||||    |||||||| ||||||  |||||| |||||||||| |||| |||  g
3'  gcug    aacaacuc ccuuac  cggacc ggcucuggca ggug cac  g
   g    -cuc        c      uu      a          -    -   au 

Deep sequencing

36916 reads, 2.43e+04 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Comments

The stem-loop sequence represented here is predicted based on homology to miRNAs cloned from Arabidopsis [1]. Its expression has not been verified in rice.

Genome context

• Coordinates (MSU7): Chr10: 14483290-14483396 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0000675

Mature sequence osa-miR166f

• Accession: MIMAT0000640
• Sequence: 72 - ucggaccaggcuucauucccc - 92
• Deep sequencing: 36912 reads, 2 experiments
• Evidence: by similarity; MI0000201
• Database links:
  • RNAcentral:URS00003065B2_39947

References

1. PMID:12101121 "MicroRNAs in plants" Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP Genes Dev. 16:1616-1626(2002).