Stem-loop osa-MIR166f

Accession

MI0000675

Description

Oryza sativa osa-MIR166f precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

70 open access papers mention osa-MIR166f
(259 sentences)

Sequence

27771 reads, 19281 reads per million, 2 experiments

cgaucaucuuguugagaggaaugucgucuggccugagaucguaccacagugguggguacacguggacggucUCGGACCAGGCUUCAUUCCCCucaacaacucgucgg
((((....((((((((.((((((..((((((.((((((((((.((((.(((.......))))))))))))))))).))))))..)))))).))))))))...)))).

Structure

-    cauc        a      uc      c          a    a   gu 
 cgau    uuguugag ggaaug  gucugg cugagaucgu ccac gug  g
 ||||    |||||||| ||||||  |||||| |||||||||| |||| |||  g
 gcug    aacaacuC CCUUAC  CGGACC GGCUcuggca ggug cac  g
g    -cuc        C      UU      A          -    -   au 

Annotation confidence Not enough data

Comments

The stem-loop sequence represented here is predicted based on homology to miRNAs cloned from Arabidopsis [1]. Its expression has not been verified in rice.

Genome context

Chr10: 14483290-14483396 [-]

Mature osa-miR166f

• Accession: MIMAT0000640
• Description: Oryza sativa osa-miR166f mature miRNA
• Sequence: 72 - UCGGACCAGGCUUCAUUCCCC - 92
• Evidence: not_experimental

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626