Stem-loop sequence osa-MIR167b

Accession

MI0000677 (change log)

Description

Oryza sativa miR167b stem-loop

Gene family

MIPF0000023; MIR167_1

Literature search

83 open access papers mention osa-MIR167b
(251 sentences)

Stem-loop

           g  -a   -c         - -               --u  ag  -a    auc   -      c    g    ga 
5' gugcccaa ag  aag  gugaagcug c cagcaugaucuaacu   gc  ac  agaa   agc ucagcu gcug uuuc  a
   |||||||| ||  |||  ||||||||| | |||||||||||||||   ||  ||  ||||   ||| |||||| |||| ||||   
3' cacggguu uc  uuc  cacuuugac g gucguacuagauugg   ug  ug  ucuu   ucg agucga cggc gaag  c
           g  cc   cu         a u               uag  ca  ag    -cu   g      u    g    ga 

Deep sequencing

86907 reads, 5.86e+04 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Comments

The stem-loop sequence represented here is predicted based on homology to miRNAs cloned from Arabidopsis [1]. Its expression has not been verified in rice.

Genome context

• Coordinates (MSU7): Chr3: 30546928-30547090 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0000677

Mature sequence osa-miR167b

• Accession: MIMAT0000642
• Sequence: 18 - ugaagcugccagcaugaucua - 38
• Deep sequencing: 86903 reads, 2 experiments
• Evidence: by similarity; MI0000208
• Database links:
  • RNAcentral:URS000013A25F_39947

References

1. PMID:12101121 "MicroRNAs in plants" Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP Genes Dev. 16:1616-1626(2002).