Stem-loop sequence osa-MIR167c

Accession

MI0000678 (change log)

Description

Oryza sativa miR167c stem-loop

Gene family

MIPF0000023; MIR167_1

Literature search

82 open access papers mention osa-MIR167c
(254 sentences)

Stem-loop

   u      ----     c      a      --             ucuga       a      ------gu    -----     cug 
5'  guccaa    gggaa gaguga gcugcc  agcaugaucuagc     augauca caagau        gcuc     ccaca   c
    ||||||    ||||| |||||| ||||||  |||||||||||||     ||||||| ||||||        ||||     |||||   c
3'  cggguu    cccuu uucacu cgacgg  ucguacuggaucg     uacuggu guucug        cgag     ggugu   u
   a      guua     c      c      cg             uuccg       -      aucguugu    uucua     ccu 

Deep sequencing

86684 reads, 5.86e+04 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr3: 33130619-33130781 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0000678

Mature sequence osa-miR167c-5p

• Accession: MIMAT0000643
• Previous IDs: osa-miR167c
• Sequence: 17 - ugaagcugccagcaugaucua - 37
• Deep sequencing: 86656 reads, 2 experiments
• Evidence: by similarity; MI0000208
• Database links:
  • RNAcentral:URS000013A25F_39947

Mature sequence osa-miR167c-3p

• Accession: MIMAT0022860
• Sequence: 123 - ggucaugcugcggcagccucacu - 145
• Deep sequencing: 14 reads, 2 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00002FA97E_39947

References

1. PMID:12101121 "MicroRNAs in plants" Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP Genes Dev. 16:1616-1626(2002).
2. PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors" Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y PLoS Pathog. 7:e1002176(2011).