Stem-loop osa-MIR167c

Accession

MI0000678

Description

Oryza sativa osa-MIR167c precursor miRNA

Gene family

MIPF0000023; MIR167_1

Literature search

82 open access papers mention osa-MIR167c
(256 sentences)

Sequence

80262 reads, 55830 reads per million, 2 experiments

uguccaagggaacgagUGAAGCUGCCAGCAUGAUCUAgcucugaaugaucaacaagaugugcucccacacugccuuccuguggaucuugagcuguugcuagucuuguggucaugccuugcuaGGUCAUGCUGCGGCAGCCUCACUucuucccauuguugggca
((((((((((((.((((((.(((((((((((((((((((.....(((((((.((((((..(((((((((.........))))).....))))........))))))))))))).....)))))))))))))..)))))).)))))).)))))....)))))))

Structure

       ----     c      A      --             ucuga       a      ------gu    -----     cug 
uguccaa    gggaa gagUGA GCUGCC  AGCAUGAUCUAgc     augauca caagau        gcuc     ccaca   c
|||||||    ||||| |||||| ||||||  |||||||||||||     ||||||| ||||||        ||||     |||||   c
acggguu    cccuu uUCACU CGACGG  UCGUACUGGaucg     uacuggu guucug        cgag     ggugu   u
       guua     c      C      CG             uuccg       -      aucguugu    uucua     ccu 

Annotation confidence Not enough data

Genome context

Chr3: 33130619-33130781 [+]

Mature osa-miR167c-5p

• Accession: MIMAT0000643
• Description: Oryza sativa osa-miR167c-5p mature miRNA
• Sequence: 17 - UGAAGCUGCCAGCAUGAUCUA - 37
• Evidence: not_experimental

Mature osa-miR167c-3p

• Accession: MIMAT0022860
• Description: Oryza sativa osa-miR167c-3p mature miRNA
• Sequence: 123 - GGUCAUGCUGCGGCAGCCUCACU - 145
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626


2. PubMed ID: 21901091
   Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
   Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
   PLoS Pathog (2011) 7:e1002176