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miRBase |
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Stem-loop sequence mmu-mir-19a |
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| Accession | MI0000688 | ||||||||||||||||||||||||||||||||||||||||||
| Symbol | MGI:Mir19a | ||||||||||||||||||||||||||||||||||||||||||
| Description | Mus musculus miR-19a stem-loop | ||||||||||||||||||||||||||||||||||||||||||
| Gene family | MIPF0000011; mir-19 | ||||||||||||||||||||||||||||||||||||||||||
| Community annotation |
This text is a summary paragraph taken from the Wikipedia entry entitled mir-19_microRNA_precursor_family. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ... The text in this section is taken from the free, online encyclopedia, Wikipedia. Anyone can edit a Wikipedia page. We hope that experts on particular microRNA sequences will use the links to Wikipedia below to edit the annotation of individual microRNAs, to add information about function, evolution, discovery, and literature references, for example. Any changes that you make will be visible in Wikipedia immediately, and in miRBase within 24 hours. Editing Wikipedia entries is straightforward. If you haven't edited a page before, you might like to take a look at the following Wikipedia help pages: You can also create new pages at Wikipedia about microRNA families that do not currently have specific entries there. Please let us know if you do, so we can incorporate your annotation into miRBase, and create the appropriate links from miRBase entries to the relevant Wikipedia pages. Please note, we're not responsible for the content of Wikipedia pages. You can read more about miRBase, Wikipedia and community annotation on this blog post. Please email us for help or with comments about this community annotation initiative. There maybe 89 known sequences today in the microRNA 19 (miR-19) family but it will change quickly. They are found in a large number of vertebrate species. The miR-19 microRNA precursor is a small non-coding RNA molecule that regulates gene expression. Within the human and mouse genome there are three copies of this microRNA that are processed from multiple predicted precursor hairpins: mouse: * miR-19a on chromosome 14 (MI0000688) * miR-19b-1 on chromosome 14 (MI0000718) * miR-19b-2 on chromosome X (MI0000546) human: * miR-19a on chromosome 13 (MI0000073) * miR-19b-1 on chromosome 13 (MI0000074) * miR-19b-2 on chromosome X (MI000075). MiR-19 has now been predicted or experimentally confirmed (MIPF0000011). In this case the mature sequence is excised from the 3' arm of the hairpin precursor.
There maybe 89 known sequences today in the microRNA 19 (miR-19) family but it will change quickly. They are found in a large number of vertebrate species. The miR-19 microRNA precursor is a small non-coding RNA molecule that regulates gene expression. Within the human and mouse genome there are three copies of this microRNA that are processed from multiple predicted precursor hairpins:[1][2][3]
MiR-19 has now been predicted or experimentally confirmed (MIPF0000011). In this case the mature sequence is excised from the 3' arm of the hairpin precursor.
Origins [edit]MiRNA seems to generally to be found in different cell types, enriched in neuronal as well as normal and malignant hematopoietic cells and tissues.[4] The presence of miR-19 has been detected in a diverse range of vertebrate animals including green anole (Anolis carolinensis),[5] primates (gorilla, human,…),[6][7] cattle (Bos taurus),[8] dog,[9] chinese hamster (Cricetulus griseus),[10] zebrafish (Danio rerio),[11] horse (Equus caballus),[12] Takifugu rubripes,[11]Tetraodon nigroviridis,[11] chicken (Gallus gallus),[13][14] gray short-tailed opossum (Monodelphis domestica),[15] platypus (Ornithorhynchus anatinus),[16] Japanese medaka (Oryzias latipes),[17] Xenopus laevis (frog),[18] Tasmanian devil (Sarcophilus harrisii),[19] pig (Sus scrofa)[20] and Zebra Finch (Taeniopygia guttata).[21] Expression [edit]MiR-17-92 cluster was identified to encode 6 single mature miRNA (miR-17, [1], miR-19, miR-20, miR-92, miR-106) containing the first oncogenic miRNA. MicroRNA from miR-19 family can be expressed from:
Finally they have tissues-specific miRNA expression. These microRNA are considered as oncogenes which improve proliferation, inhibits apoptosis and induce tumor angiogenesis.[27] miR-19a/b roles [edit]Acute lymphoblastic leukemia [edit]Ectopic expression of miR-19 represses CYLD expression, while miR-19 inhibitor treatment induces CYLD protein expression and decreases NF-kB expression in the downstream signaling pathway. Thus, miR-19, CYLD and NF-kB form a regulatory feedforward loop, which provides new clues for sustained activation of NF-kB in T-cell acute lymphoblastic leukemia.[22]
MiR-19b coordinates a PI3K pathway acting on cell survival in lymphocytes contributing to leukaemogenesis.[28][29][30] This pathway is activated through PTEN loss and can contribute to reduce sensitivity to chemotherapy and (in T-ALL) may impact the effectiveness of therapeutic gamma-secretase inhibitors. Primary central nervous system lymphoma [edit]Baraniskin and al. study show that miR-21, miR-19, and miR-92a levels in cerebrospinal fluid (CSF) seems to be good biomarkers to diagnose a Primary central nervous system lymphoma (PCNSL). They also demonstrate that miRNAs in plasma are in a resistant form to intrinsic RNase activity, and there is a low RNase activity in the CSF.[25] B-cell lymphomas [edit]MiR-19 has been identified as a key responsible for the oncogenic activity, reducing the tumor suppressor gene PTEN expression and activating AKT/mTOR pathway. This cluster might be important regulator on cancer and aging.[31][32] Keratinocytes [edit]In the cell response to stress, the most important is the post-transcriptional control of the important gene expression to cell survival and apoptosis. MiR-19 regulates the Ras homolog B (RhoB) expression in keratinocytes after ultraviolet (UV) radiation exposition. This phenomenon needs the binding of human antigen R (HuR) to the rhoB mRNA 3'-untranslated region. In this case, HuR acts positively on miRNA action. The interaction between HuR and miR-19 with rhoB is lost under UV treatment. Here, miR-19, linked to RhoB, acts like a protector against keratinocyte apoptosis. A 52-nucleotide-long sequence of the rhoB 3'-UTR spanning bases 818–870, containing the miR-19 and the HuR binding site was sufficient for UV regulation. This event is UV dependent![34] Multiple Myeloma (MM) [edit]One study on multiple myeloma patients permitted to identified a selective up-regulation of miR-32 and the miR-17-92 cluster. MiR-19a and miR-19b were shown to down regulate SOCS-1 expression (a specific gene that inhibits IL-6 growth signaling). Therefore, miR-17-92 with miR-21, inhibits apoptosis and promotes cell survival.[33] Retinoblastoma [edit]In this case, miR-17-92 cluster promotes retinoblastoma due to loss of Rb family members. The mouse retinal development need miR-17-92 over-expresson with Rb and p107 deletion, but it occurred frequent emergence of retinoblastoma and metastasis to the brain. Role in normal development of heart, lungs and immune system [edit]Scientists observed that the loss of function of the miR-17-92 cluster is induced in smaller embryos and postnatal deaths.[36] The specific role of this cluster in heart and lung development remains unclear, but the observations described above show that these miRNAs are normally highly expressed in embryonic lung and decrease with maturity. Moreover, transgenic expression of these miRNAs specifically in lung epithelium results in severe developmental defects with enhanced proliferation and inhibition of differentiation of epithelial cells. Role in the endothelial differentiation of stem cells [edit]The miR-17-92 cluster containing miR-19 miRNA family is also involved into control endothelial cell functions and neo-vascularization. MiRNA cluster (miR-17, miR-18, miR-19 and miR-20) increased during the induction of endothelial cell differentiation in embryonic stem cells (tested on murine) or induce pluripotent stem cells. Even though this cluster regulates vascular integrity and angiogenesis, none of each members has a significant impact on the endothelial differentiation of pluripotent stem cells.[37] miR-19a Roles [edit]Spinocerebellar ataxia type 1 [edit]It has been showing that the 3' UTR of the ATXN1 gene contains 3 target sites for miR-19, and this microRNA shows moderate down regulation of reporter genes containing the ATXN1 3' UTR. Furthermore, it directly binds to the ATXN1 3´UTR to suppress the translation of ATXN1. ATXN1 is also regulated by miR-101, and miR-130.[24] Breast Cancer [edit]MiR-19 regulates tissue factor expression at a post-transcriptional level in breast cancer cells, providing a molecular basis for the selective expression of the tissue factor gene. Thanks to bioinformatics analyses, scientists predicted microRNA-Binding sites for miR-19, miR-20 and miR-106b in the 3'-UTR tissue factor transcript. Experiments confirmed that it negatively regulates gene expression in MCF-7 cells, and over-expression of miR-19 downregulates tissue factor expression in MDA-MB-231 cells (Human breast cancer cell lines). The main action of miR-19 seems to inhibit protein translation of the tissue factor gene in less invasive breast cancer cells.[27] miR-19b Roles [edit]Rheumatoid arthritis [edit]MiR-19 also takes part in inflammatory responses enhancing or repressing pro-inflammatory mediators expression. It positively regulates Toll-like receptor signaling with Dicer1 deletion and miRNA depletion. MiR-19b is an important protagonist in this phenomenon, regulating positively NF-kB activity. MiRNA depletion inhibits cytokines production by NF-kB. This indicates that miRNA control of NF-kB signaling repressors thanks to its relief. Some important regulators of NF-kB signaling (like A20 (Tnfaip3), Cyld, and Cezanne (Otud7b)) is targeted by the miR-17-92 cluster. References [edit]
Further reading [edit]
External links [edit]
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| Stem-loop |
c u -- --- ag gcag cc cuguuaguuuugcauag uugcac uaca a |||| || ||||||||||||||||| |||||| |||| a cguc gg gguagucaaaacguauc aacgug augu g c u ua uug aaGet sequence |
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| Deep sequencing |
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| Genome context |
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Mature sequence mmu-miR-19a-5p |
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| Accession | MIMAT0004660 |
| Previous IDs | mmu-miR-19a* |
| Sequence |
13 - uaguuuugcauaguugcacuac - 34 |
| Deep sequencing | 512 reads, 49 experiments |
| Evidence | experimental; cloned [2], Solexa [3-4] |
| Predicted targets |
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Mature sequence mmu-miR-19a-3p |
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| Accession | MIMAT0000651 |
| Previous IDs | mmu-miR-19a |
| Sequence |
49 - ugugcaaaucuaugcaaaacuga - 71 |
| Deep sequencing | 253091 reads, 82 experiments |
| Evidence | experimental; cloned [1-2], Solexa [3-4] |
| Validated targets |
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| Predicted targets |
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References |
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| 1 |
PMID:12554860
"Numerous microRNPs in neuronal cells containing novel microRNAs"
Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G
RNA. 9:180-186(2003).
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| 2 |
PMID:17604727
"A mammalian microRNA expression atlas based on small RNA library sequencing"
Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M
Cell. 129:1401-1414(2007).
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| 3 |
PMID:20215419
"MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing"
Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A
Mol Hum Reprod. 16:463-471(2010).
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| 4 |
PMID:20413612
"Mammalian microRNAs: experimental evaluation of novel and previously annotated genes"
Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP
Genes Dev. 24:992-1009(2010).
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