Stem-loop sequence hsa-mir-369

Accession

MI0000777 (change log)

Symbol

HGNC:MIR369

Description

Homo sapiens miR-369 stem-loop

Gene family

MIPF0000018; mir-154

Literature search

42 open access papers mention hsa-mir-369
(73 sentences)

Stem-loop

   u   ag               ua      cuuua 
5'  uga  ggagaucgaccgugu  uauucg     u
    |||  |||||||||||||||  ||||||      
3'  acu  uuucuaguugguaca  auaagc     u
   g   cu               ua      uucag 

Deep sequencing

14277 reads, 54 reads per million, 126 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr14: 101065598-101065667 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-369

• hsa-mir-323b: chr14: 101056219-101056300 [+]
• hsa-mir-154: chr14: 101059755-101059838 [+]
• hsa-mir-496: chr14: 101060573-101060674 [+]
• hsa-mir-377: chr14: 101062050-101062118 [+]
• hsa-mir-541: chr14: 101064495-101064578 [+]
• hsa-mir-409: chr14: 101065300-101065378 [+]
• hsa-mir-412: chr14: 101065447-101065537 [+]
• hsa-mir-369: chr14: 101065598-101065667 [+]
• hsa-mir-410: chr14: 101065912-101065991 [+]
• hsa-mir-656: chr14: 101066724-101066801 [+]

Database links

• EntrezGene:MIR369
• HGNC:MIR369
• RNAcentral:URS000075D5A7_9606
• miRBase Tracker:MI0000777

Mature sequence hsa-miR-369-5p

• Accession: MIMAT0001621
• Sequence: 9 - agaucgaccguguuauauucgc - 30
• Deep sequencing: 3066 reads, 107 experiments
• Evidence: experimental; cloned [2-4]
• Database links:
  • RNAcentral:URS00002A71AD_9606
• Predicted targets:
  • TargetMiner:hsa-miR-369-5p
  • TargetScanVert:hsa-miR-369-5p
  • miRDB:hsa-miR-369-5p
  • microrna.org:hsa-miR-369-5p

Mature sequence hsa-miR-369-3p

• Accession: MIMAT0000721
• Previous IDs: hsa-miR-369
• Sequence: 44 - aauaauacaugguugaucuuu - 64
• Deep sequencing: 11211 reads, 125 experiments
• Evidence: experimental; cloned [1-4]
• Database links:
  • RNAcentral:URS0000442B0D_9606
• Predicted targets:
  • TargetMiner:hsa-miR-369-3p
  • TargetScanVert:hsa-miR-369-3p
  • miRDB:hsa-miR-369-3p
  • microrna.org:hsa-miR-369-3p

References

1. PMID:15183728 "Human embryonic stem cells express a unique set of microRNAs" Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS, Moon SY, Kim VN, Kim KS Dev Biol. 270:488-498(2004).
2. PMID:15891114 "Clustering and conservation patterns of human microRNAs" Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A, Brownstein MJ, Tuschl T, Margalit H Nucleic Acids Res. 33:2697-2706(2005).
3. PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
4. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).