Stem-loop sequence hsa-mir-369

Accession

MI0000777

Symbol

HGNC:MIR369

Description

Homo sapiens miR-369 stem-loop

Gene family

MIPF0000018; mir-154

Stem-loop

u   ag               ua      cuuua 
 uga  ggagaucgaccgugu  uauucg     u
 |||  |||||||||||||||  ||||||      
 acu  uuucuaguugguaca  auaagc     u
g   cu               ua      uucag 

Deep sequencing

178 reads, 13 experiments

Genome context

• Coordinates (GRCh37.p5): chr14: 101531935-101532004 [+]
• Overlapping transcripts:

  sense

  ENST00000362155 ; MIR369-201; exon 1

Clustered miRNAs

< 10kb from hsa-mir-369

• hsa-mir-323b: chr14: 101522556-101522637 [+]
• hsa-mir-154: chr14: 101526092-101526175 [+]
• hsa-mir-496: chr14: 101526910-101527011 [+]
• hsa-mir-377: chr14: 101528387-101528455 [+]
• hsa-mir-541: chr14: 101530832-101530915 [+]
• hsa-mir-409: chr14: 101531637-101531715 [+]
• hsa-mir-412: chr14: 101531784-101531874 [+]
• hsa-mir-369: chr14: 101531935-101532004 [+]
• hsa-mir-410: chr14: 101532249-101532328 [+]
• hsa-mir-656: chr14: 101533061-101533138 [+]

Database links

• ENTREZGENE: 442914;MIR369
• HGNC: 31783;MIR369

Mature sequence hsa-miR-369-5p

• Accession: MIMAT0001621
• Sequence: 9 - agaucgaccguguuauauucgc - 30
• Deep sequencing: 85 reads, 7 experiments
• Evidence: experimental; cloned [2-4]
• Validated targets:
  • MIRTARBASE:hsa-miR-369-5p
  • TARBASE:hsa-miR-369-5p
• Predicted targets:
  • DIANA-MICROT:hsa-miR-369-5p
  • MICRORNA.ORG:hsa-miR-369-5p
  • MIRDB:hsa-miR-369-5p
  • RNA22-HSA:hsa-miR-369-5p
  • TARGETMINER:hsa-miR-369-5p
  • TARGETSCAN-VERT:hsa-miR-369-5p

Mature sequence hsa-miR-369-3p

• Accession: MIMAT0000721
• Previous IDs: hsa-miR-369
• Sequence: 44 - aauaauacaugguugaucuuu - 64
• Deep sequencing: 93 reads, 7 experiments
• Evidence: experimental; cloned [1-4]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-369-3p
  • MICRORNA.ORG:hsa-miR-369-3p
  • MIRDB:hsa-miR-369-3p
  • RNA22-HSA:hsa-miR-369-3p
  • TARGETMINER:hsa-miR-369-3p
  • TARGETSCAN-VERT:hsa-miR-369-3p

References

1. PMID:15183728 "Human embryonic stem cells express a unique set of microRNAs" Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS, Moon SY, Kim VN, Kim KS Dev Biol. 270:488-498(2004).
2. PMID:15891114 "Clustering and conservation patterns of human microRNAs" Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A, Brownstein MJ, Tuschl T, Margalit H Nucleic Acids Res. 33:2697-2706(2005).
3. PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
4. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).