Stem-loop sequence hsa-mir-382

Accession

MI0000790 (change log)

Symbol

HGNC:MIR382

Description

Homo sapiens miR-382 stem-loop

Gene family

MIPF0000018; mir-154

Literature search

69 open access papers mention hsa-mir-382
(436 sentences)

Stem-loop

       u       -a           ug      - uuu 
5' uacu gaagaga  guuguucgugg  gauucg c   a
   |||| |||||||  |||||||||||  |||||| |   c
3' auga cuuuuuu  caacaggcacu  cuaagc g   u
       -       ca           ua      a uau 

Deep sequencing

36696 reads, 23.8 reads per million, 126 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr14: 101054306-101054381 [+]
• Overlapping transcripts:

  antisense

  OTTHUMT00000414339 ; CTD-2644I21.1-001; exon 2

  ENST00000554540 ; CTD-2644I21.1-001; exon 2

Clustered miRNAs

< 10kb from hsa-mir-382

• hsa-mir-381: chr14: 101045920-101045994 [+]
• hsa-mir-487b: chr14: 101046455-101046538 [+]
• hsa-mir-539: chr14: 101047321-101047398 [+]
• hsa-mir-889: chr14: 101047901-101047979 [+]
• hsa-mir-544a: chr14: 101048658-101048748 [+]
• hsa-mir-655: chr14: 101049550-101049646 [+]
• hsa-mir-487a: chr14: 101052446-101052525 [+]
• hsa-mir-382: chr14: 101054306-101054381 [+]
• hsa-mir-134: chr14: 101054687-101054759 [+]
• hsa-mir-668: chr14: 101055258-101055323 [+]
• hsa-mir-485: chr14: 101055419-101055491 [+]
• hsa-mir-323b: chr14: 101056219-101056300 [+]
• hsa-mir-154: chr14: 101059755-101059838 [+]
• hsa-mir-496: chr14: 101060573-101060674 [+]
• hsa-mir-377: chr14: 101062050-101062118 [+]

Database links

• EntrezGene:MIR382
• HGNC:MIR382
• RNAcentral:URS000075ABA3_9606
• miRBase Tracker:MI0000790

Mature sequence hsa-miR-382-5p

• Accession: MIMAT0000737
• Previous IDs: hsa-miR-382
• Sequence: 11 - gaaguuguucgugguggauucg - 32
• Deep sequencing: 31012 reads, 120 experiments
• Evidence: experimental; cloned [1-3]
• Database links:
  • RNAcentral:URS000035E174_9606
• Predicted targets:
  • TargetMiner:hsa-miR-382-5p
  • TargetScanVert:hsa-miR-382-5p
  • miRDB:hsa-miR-382-5p
  • microrna.org:hsa-miR-382-5p

Mature sequence hsa-miR-382-3p

• Accession: MIMAT0022697
• Sequence: 47 - aaucauucacggacaacacuu - 67
• Deep sequencing: 5683 reads, 116 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000013E79D_9606
• Predicted targets:
  • TargetMiner:hsa-miR-382-3p
  • TargetScanVert:hsa-miR-382-3p
  • miRDB:hsa-miR-382-3p

References

1. PMID:15891114 "Clustering and conservation patterns of human microRNAs" Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A, Brownstein MJ, Tuschl T, Margalit H Nucleic Acids Res. 33:2697-2706(2005).
2. PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).