Stem-loop sequence mmu-mir-382

Accession

MI0000799

Symbol

MGI:Mir382

Description

Mus musculus miR-382 stem-loop

Gene family

MIPF0000018; mir-154

Stem-loop

    u       -a           ug      - uuu 
uacu gaagaga  guuguucgugg  gauucg c   a
|||| |||||||  |||||||||||  |||||| |   c
auga cuuuuuu  caacaggcacu  cuaagc g   u
    -       ca           ua      a ugu 

Deep sequencing

84793 reads, 79 experiments

Genome context

• Coordinates (GRCm38): chr12: 109733771-109733846 [+]
• Overlapping transcripts:

  sense

  ENSMUST00000083494 ; Mir382-201; exon 1

Clustered miRNAs

< 10kb from mmu-mir-382

• mmu-mir-376a: chr12: 109723781-109723848 [+]
• mmu-mir-300: chr12: 109724313-109724391 [+]
• mmu-mir-381: chr12: 109726822-109726896 [+]
• mmu-mir-487b: chr12: 109727333-109727414 [+]
• mmu-mir-539: chr12: 109728129-109728202 [+]
• mmu-mir-544: chr12: 109729325-109729402 [+]
• mmu-mir-382: chr12: 109733771-109733846 [+]
• mmu-mir-134: chr12: 109734139-109734209 [+]
• mmu-mir-668: chr12: 109734732-109734797 [+]
• mmu-mir-485: chr12: 109734902-109734974 [+]
• mmu-mir-453: chr12: 109735619-109735700 [+]
• mmu-mir-154: chr12: 109738433-109738498 [+]
• mmu-mir-496a: chr12: 109739119-109739197 [+]
• mmu-mir-377: chr12: 109740510-109740577 [+]
• mmu-mir-541: chr12: 109742409-109742498 [+]
• mmu-mir-409: chr12: 109743158-109743236 [+]
• mmu-mir-412: chr12: 109743289-109743368 [+]
• mmu-mir-369: chr12: 109743418-109743496 [+]
• mmu-mir-410: chr12: 109743715-109743795 [+]

Database links

• ENTREZGENE: 723912;Mir382
• MGI: 3619392;Mir382

Mature sequence mmu-miR-382-5p

• Accession: MIMAT0000747
• Previous IDs: mmu-miR-382
• Sequence: 11 - gaaguuguucgugguggauucg - 32
• Deep sequencing: 56873 reads, 71 experiments
• Evidence: experimental; cloned [1-3], Solexa [4-5]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-382-5p
  • MICRORNA.ORG:mmu-miR-382-5p
  • MIRDB:mmu-miR-382-5p
  • RNA22-MMU:mmu-miR-382-5p
  • TARGETSCAN-VERT:mmu-miR-382

Mature sequence mmu-miR-382-3p

• Accession: MIMAT0004691
• Previous IDs: mmu-miR-382*
• Sequence: 49 - ucauucacggacaacacuuuuu - 70
• Deep sequencing: 27900 reads, 70 experiments
• Evidence: experimental; cloned [3], Solexa [4-5]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-382-3p
  • MICRORNA.ORG:mmu-miR-382-3p
  • MIRDB:mmu-miR-382-3p
  • RNA22-MMU:mmu-miR-382-3p

References

1. PMID:15538371 "A pancreatic islet-specific microRNA regulates insulin secretion" Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M Nature. 432:226-230(2004).
2. PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
4. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
5. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).