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miRBase |
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Stem-loop sequence rno-let-7i |
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Accession | MI0000835 (change log) | ||||
Description | Rattus norvegicus let-7i stem-loop | ||||
Gene family | MIPF0000002; let-7 | ||||
Literature search |
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107 open access papers mention rno-let-7i | ||||
Stem-loop |
u u -------- u ugu 5' cuggc gagguaguaguuugugc guu gg cgggu g ||||| ||||||||||||||||| ||| || ||||| a 3' gaucg uuccgucaucgaacgcg caa uc gcccg c - u uagaggug - uua |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Comments |
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [4]. The ends of the miRNA may be offset with respect to previous annotations. |
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Genome context |
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Database links |
Mature sequence rno-let-7i-5p |
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Accession | MIMAT0000779 |
Previous IDs | rno-let-7i |
Sequence |
6 - ugagguaguaguuugugcuguu - 27 |
Deep sequencing | 7593666 reads, 512 experiments |
Evidence | experimental; cloned [1-5], SOLiD [6] |
Predicted targets |
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Mature sequence rno-let-7i-3p |
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Accession | MIMAT0004707 |
Previous IDs | rno-let-7i* |
Sequence |
62 - cugcgcaagcuacugccuugcu - 83 |
Deep sequencing | 16863 reads, 479 experiments |
Evidence | experimental; cloned [4], SOLiD [6] |
Predicted targets |
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References |
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1 |
PMID:14691248
"Identification of many microRNAs that copurify with polyribosomes in mammalian neurons"
Proc Natl Acad Sci U S A. 101:360-365(2004).
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2 |
PMID:15345052
"Microarray analysis of microRNA expression in the developing mammalian brain"
Genome Biol. 5:R68(2004).
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3 | |
4 |
PMID:17604727
"A mammalian microRNA expression atlas based on small RNA library sequencing"
Cell. 129:1401-1414(2007).
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5 |
PMID:17805466
"Cloning and identification of novel microRNAs from rat hippocampus"
Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
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6 |
PMID:20403161
"Small RNA expression and strain specificity in the rat"
BMC Genomics. 11:249(2010).
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