Stem-loop sequence rno-mir-24-2

Accession

MI0000855 (change log)

Description

Rattus norvegicus miR-24-2 stem-loop

Gene family

MIPF0000041; mir-24

Literature search

39 open access papers mention rno-mir-24-2
(183 sentences)

Stem-loop

   -   -u    ---cu     ccgc       g   a         aa    ug  u 
5'  gcc  cucc     gggcu    cuccugu ccu cugagcuga  cagu  au c
    |||  ||||     |||||    ||||||| ||| |||||||||  ||||  ||  
3'  cgg  gagg     cccga    gaggaca gga gacuugacu  guca  ug c
   a   uc    auacc     -ccu       a   c         cg    cg  a 

Deep sequencing

724928 reads, 451 reads per million, 494 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr19: 25318863-25318970 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-24-2

• rno-mir-23a: chr19: 25318582-25318656 [+]
• rno-mir-27a: chr19: 25318736-25318822 [+]
• rno-mir-24-2: chr19: 25318863-25318970 [+]

Database links

• EntrezGene:Mir24-2
• miRBase Tracker:MI0000855

Mature sequence rno-miR-24-2-5p

• Accession: MIMAT0005441
• Previous IDs: rno-miR-24-2*
• Sequence: 25 - gugccuacugagcugaaacagu - 46
• Deep sequencing: 151634 reads, 490 experiments
• Evidence: experimental; cloned [3], SOLiD [5]
• Predicted targets:
  • TargetScanVert:rno-miR-24-2-5p
  • miRDB:rno-miR-24-2-5p
  • microrna.org:rno-miR-24-2-5p

Mature sequence rno-miR-24-3p

• Accession: MIMAT0000794
• Previous IDs: rno-miR-24
• Sequence: 61 - uggcucaguucagcaggaacag - 82
• Deep sequencing: 1146242 reads, 492 experiments
• Evidence: experimental; cloned [1-4], Northern [2], SOLiD [5]
• Predicted targets:
  • TargetScanVert:rno-miR-24-3p
  • miRDB:rno-miR-24-3p
  • microrna.org:rno-miR-24-3p

References

1. PMID:15345052 "Microarray analysis of microRNA expression in the developing mammalian brain" Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR Genome Biol. 5:R68(2004).
2. PMID:16766679 "Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes" Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H Genes Dev. 20:1732-1743(2006).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
4. PMID:17805466 "Cloning and identification of novel microRNAs from rat hippocampus" He X, Zhang Q, Liu Y, Pan X Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
5. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).