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miRBase |
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Stem-loop sequence rno-mir-26a |
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Accession | MI0000857 (change log) | ||||
Description | Rattus norvegicus miR-26a stem-loop | ||||
Gene family | MIPF0000043; mir-26 | ||||
Literature search |
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54 open access papers mention rno-mir-26a | ||||
Stem-loop |
a - g u c g gca g 5' aggcc gug ccuugu caaguaauc aggauaggcu u g u ||||| ||| |||||| ||||||||| |||||||||| | | 3' uccgg cgc ggggca guucauugg ucuuauccgg g c c g g a c u g -aa c |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Comments |
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations. |
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Genome context |
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Database links |
Mature sequence rno-miR-26a-5p |
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Accession | MIMAT0000796 |
Previous IDs | rno-miR-26a |
Sequence |
16 - uucaaguaauccaggauaggcu - 37 |
Deep sequencing | 46205665 reads, 514 experiments |
Evidence | experimental; cloned [1-3], SOLiD [4] |
Predicted targets |
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Mature sequence rno-miR-26a-3p |
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Accession | MIMAT0017100 |
Previous IDs | rno-miR-26a* |
Sequence |
55 - ccuauucuugguuacuugcac - 75 |
Deep sequencing | 730 reads, 259 experiments |
Evidence | experimental; SOLiD [4] |
Predicted targets |
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References |
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1 | |
2 |
PMID:17604727
"A mammalian microRNA expression atlas based on small RNA library sequencing"
Cell. 129:1401-1414(2007).
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3 |
PMID:17805466
"Cloning and identification of novel microRNAs from rat hippocampus"
Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
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4 |
PMID:20403161
"Small RNA expression and strain specificity in the rat"
BMC Genomics. 11:249(2010).
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